Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere02g2438 ATGTCATTCCGAAGTATAGCTCGTGATGTAAGAAATAGCTTAGGGAGCCTATCAAGACGAAGTTTTGATGTCCGGTTGACTGGCCATCACAGAGGACAATCTAATGGCTCAATACATGATCAGCCTCTGGTAATTCAAAATAGTAGTTGGGCTAGCTTGCCCCCAGAATTGTTATATGATATCATTAGAAGGCTAGAAGACAGTGAAAGTGCATGGCCTGCTCGAAAGCATGTTGTTGCATGTGCTGCAGTTTGCCAGTCTTGGAGGGCTATGTGCAAGGAAATTGTTAAGAGTCCAGAGTTCAGTGGCAAGCTTACTTTCCCTGTGTCCTTGAAGCAGCCAGGACCACGAGATGGAACCATTCAATGTTTTATCAGAAGAGATAAATCTAATTTAACATACCACCTATTCCTTTGTCTCAGCCCTGCTTTGTTAGTTGAAAATGGAAAATTCCTCCTTTCTGCTAGGAGGACACGAAGAACAACTTACACAGAGTATGTTATTTCCATGGATGCTGACAACATCTCCAGATCAAGTAGCACTTACATTGGAAAGCTGAGATCAAACTTTCTTGGTACGAAATTTATAATATATGATACACAGCCTCCATGCACTTCTGCCCATATACCGCCTCTGGGGAGGACAAGCCGAAGGTTTTATTCCAAAAAGGTCTCGCCAAAGGTCCCATCTGGGAGTTACAACATAGCTCAAGTAACATATGAATTAAATGTGCTAGGGACACGAGGCCCAAGGAGGATGCATTGCATTATGCATTCAATACCAGCATCATCACTTGATGCAGGTGGCACAGTTCCTGGCCAACCAGAGCTTCTTCCTTGCCCCCTGGGAGACTCATTCCGGAGCATCTCTTTTTCAAAATCTTTAGATCACTCTATTGAGTTCAGCAGCTCAAGATTTAGTGAGGTTGTGGGATCCTGCAATGAGGATGAGGATGGCAAGATGAGGCCCTTGATTCTGAAAAACAAACCTCCAAGATGGCACGAACAGTTGCAATGTTGGTGCCTTAATTTCCGGGGCCGGGTAACAGTTGCATCGGTTAAAAACTTTCAGTTGATAGCTGCTACCCAGCCAGCGGCTGGTGCTCCTACGCCATCTCAGCCAGCCCCACCGGAGCAAGATAAGATAATTCTGCAGTTTGGTAAAGTTGGGAAAGATATGTTCACCATGGATTATCGGTATCCTCTATCAGCTTTCCAGGCTTTTGCGATATGCTTGAGCAGCTTTGACACCAAATTGGCTTGTGAATAA 1269 0.446 MSFRSIARDVRNSLGSLSRRSFDVRLTGHHRGQSNGSIHDQPLVIQNSSWASLPPELLYDIIRRLEDSESAWPARKHVVACAAVCQSWRAMCKEIVKSPEFSGKLTFPVSLKQPGPRDGTIQCFIRRDKSNLTYHLFLCLSPALLVENGKFLLSARRTRRTTYTEYVISMDADNISRSSSTYIGKLRSNFLGTKFIIYDTQPPCTSAHIPPLGRTSRRFYSKKVSPKVPSGSYNIAQVTYELNVLGTRGPRRMHCIMHSIPASSLDAGGTVPGQPELLPCPLGDSFRSISFSKSLDHSIEFSSSRFSEVVGSCNEDEDGKMRPLILKNKPPRWHEQLQCWCLNFRGRVTVASVKNFQLIAATQPAAGAPTPSQPAPPEQDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLSSFDTKLACE 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere02g2438 422 CDD F-box_AtTLP-like 50 94 - -
Dere02g2438 422 FunFam Tubby-like F-box protein 107 422 - -
Dere02g2438 422 Pfam Tub family 111 417 IPR000007 -
Dere02g2438 422 ProSitePatterns Tub family signature 1. 344 357 IPR018066 -
Dere02g2438 422 SUPERFAMILY F-box domain 46 93 IPR036047 GO:0005515
Dere02g2438 422 PANTHER TUBBY-RELATED 29 420 - -
Dere02g2438 422 SUPERFAMILY Tubby C-terminal domain-like 99 422 IPR025659 -
Dere02g2438 422 Gene3D - 45 98 - -
Dere02g2438 422 FunFam Tubby-like F-box protein 45 98 - -
Dere02g2438 422 Gene3D Tubby Protein; Chain A 109 416 IPR025659 -
Dere02g2438 422 PRINTS Tubby superfamily signature 400 422 IPR000007 -
Dere02g2438 422 PRINTS Tubby superfamily signature 182 206 IPR000007 -
Dere02g2438 422 PRINTS Tubby superfamily signature 166 182 IPR000007 -
Dere02g2438 422 PRINTS Tubby superfamily signature 232 259 IPR000007 -
Dere02g2438 422 PRINTS Tubby superfamily signature 344 360 IPR000007 -
Dere02g2438 422 PRINTS Tubby superfamily signature 326 343 IPR000007 -
Dere02g2438 422 PRINTS Tubby superfamily signature 379 398 IPR000007 -
Dere02g2438 422 Pfam F-box domain 50 97 IPR001810 GO:0005515
Dere02g2438 422 ProSitePatterns Tub family signature 2. 407 422 IPR018066 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere02g2438 Dere-ChrDere02 26295756 26298725 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere02g2438 1 422 TUB Transcription Factor Family AT1G76900 69.048 0.0 608
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Dere02g2438 Tub 1.5e-116 CL0395
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere02g2438 02 26295756 26298725 Dere02g2438 02 26295756 26298725 ECH