Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere02g2424 ATGCTTTCATTTACTCCGCAGACCAAACGGAGACGTCTTGAAAGAATACAAAAGATGGCTGATGCTGAGGATATTCAACCTCTCGTTGTTGACAATGGAACTGGAATGGTCAAGGCTGGTTTTGCTGGTGATGATGCCCCAAGGGCTGTGTTCCCCAGTATTGTTGGACGACCTCGTCACACTGGTGTTATGGTTGGGATGGGTCAGAAGGACGCATATGTGGGTGATGAAGCACAGTCAAAAAGAGGTATCCTTACGTTGAAGTACCCTATAGAGCATGGAATAGTAAGCAATTGGGACGATATGGAGAAGATTTGGCATCACACGTTCTACAATGAGCTTCGTGTTGCCCCTGAAGAACACCCAGTACTTCTTACTGAGGCACCACTTAACCCGAAGGCTAATAGAGAGAAGATGACCCAAATCATGTTTGAGACTTTCAATGTGCCTGCCATGTATGTTGCCATCCAGGCTGTTCTATCTCTCTATGCCAGTGGACGTACAACAGGTATTGTCCTCGATTCTGGTGATGGTGTGAGCCACACAGTGCCCATTTATGAAGGGTATGCTCTCCCACATGCAATCCTTCGGTTGGACCTTGCTGGTCGTGACTTAACAGATTACTTGATGAAAATTCTCACCGAGAGAGGATACTCTTTCACTACCTCTGCTGAGCGTGAAATTGTACGTGACATGAAGGAGAAGCTAGCATATGTGGCCCTTGATTATGAGCAAGAGTTGGAGACTTCTAAGAGTAGCTCATCAGTAGAGAAGAGCTATGAGTTGCCTGATGGACAGGTTATCACAATTGGGGCTGAGAGATTCCGATGCCCAGAAGTACTTTTCCAGCCTTCTTTCATTGGTATGGAAGCTGCTGGAATTCATGAAACAACCTACAATTCTATCATGAAATGTGATGTTGATATTAGGAAGGATCTATATGGAAATATTGTGCTCAGTGGTGGCTCAACTATGTTCCCTGGAATTGCTGATCGTATGAGCAAGGAAATTACTGCCCTTGCACCAAGTAGCATGAAGATCAAGGTGGTTGCACCACCTGAGAGAAAGTACAGTGTCTGGATTGGTGGGTCTATTTTGGCGTCACTTAGCACCTTCCAACAGATGTGGATATCCAAGGGTGAATATGATGAATCTGGTCCGGCAATCGTTCACCGTAAGTGTTTCTGA 1188 0.4545 MLSFTPQTKRRRLERIQKMADAEDIQPLVVDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTSAEREIVRDMKEKLAYVALDYEQELETSKSSSSVEKSYELPDGQVITIGAERFRCPEVLFQPSFIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPAIVHRKCF 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere02g2424 395 Pfam Actin 23 395 IPR004000 -
Dere02g2424 395 CDD NBD_sugar-kinase_HSP70_actin 28 201 - -
Dere02g2424 395 PRINTS Actin signature 46 55 IPR004000 -
Dere02g2424 395 PRINTS Actin signature 81 103 IPR004000 -
Dere02g2424 395 PRINTS Actin signature 160 179 IPR004000 -
Dere02g2424 395 PRINTS Actin signature 256 272 IPR004000 -
Dere02g2424 395 PRINTS Actin signature 135 148 IPR004000 -
Dere02g2424 395 PRINTS Actin signature 69 80 IPR004000 -
Dere02g2424 395 ProSitePatterns Actins signature 2. 376 384 IPR004001 -
Dere02g2424 395 FunFam Actin, muscle 200 291 - -
Dere02g2424 395 Gene3D Actin; Chain A, domain 4 200 291 - -
Dere02g2424 395 PANTHER ACTIN 27 388 IPR004000 -
Dere02g2424 395 SMART actin_3 25 395 IPR004000 -
Dere02g2424 395 Gene3D - 158 358 - -
Dere02g2424 395 FunFam Actin, alpha skeletal muscle 21 182 - -
Dere02g2424 395 SUPERFAMILY Actin-like ATPase domain 167 395 IPR043129 -
Dere02g2424 395 SUPERFAMILY Actin-like ATPase domain 24 173 IPR043129 -
Dere02g2424 395 ProSitePatterns Actins and actin-related proteins signature. 124 136 IPR020902 -
Dere02g2424 395 Gene3D - 28 389 - -
Dere02g2424 395 ProSitePatterns Actins signature 1. 73 83 IPR004001 -
Dere02g2424 395 FunFam Major actin 279 358 - -
Dere02g2424 395 FunFam Putative actin-related protein 5 359 387 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere02g2424 Dere-ChrDere02 25836093 25839139 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere02g2424 19 395 Cytoskeleton Gene Families AT5G09810 96.817 0.0 761