Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere02g2421 ATGCATTTGGGTCATTATTGTACAACGACTAGCAAAATGGTCAGAAGTGTTGATGTTGTGGCTGATGAGTTGAGCACCATTGAAGCATTTGAACCATTGCCTGAGGATTTTGATCCGAATGCTATGATTAAAGATCCTGTACCACACACAGTTGAAAACAATGGGAGTGTCAATGTGGGAGCCAAGATGAGTGAGGATAAAAATAAAAGAGAGATAGTACTAGGAAGGAATGTTCATACCACATGCCTGGAAGTCACAGAGCCTGATGCTGATGATGAGGTTACTGGAGACAGGGAAGCTTATATGGCAAGTGTGTTAGCTAGATACAGGAAATCTCTGATGGAAAGGACTAAGCATCATTTAGGTTATCCCTATAATTTGGATTTCGACTATGGTGCACTTGCTCAGCTGCAGCACTTTTCAATAAACAACCTGGGAGATCCATTTATTGAAAGCAACTATGGTGTCCACTCACGGCAGTTTGAAGTAGGTGTTTTGGATTGGTTTGCCCGATTGTGGGAGATTGAGAAAAGTGAGTACTGGGGCTATATAACCAACTGCGGCACGGAAGGCAATCTCCATGGCATTCTAGTGGGGAGAGAGGTTTTCCCAGATGGAATTCTGTATGCCTCACGGGAAACACATTATTCTGTTTTCAAGGCTGCTCGTATGTACAGAATGGAATGTGTGAAAATTGACACACTCTGTTCTGGGGAAATTGATTGTGATGATTTCAAGGCCAAGATTCTTCGTAACAAGGACAAGCCAGCAATTGTAAATGTGAATATAGGCACAACCGTCAAAGGAGCTGTGGATGATCTTGATCTAGTCATTAAGACACTTGAAGAAGCAGGATTCTCGCATGACCAATTCTACATCCATTGTGATGGAGCTTTGTTTGGTCTCATGATGCCTTTTGTCAAACGTGCTCCAAAAGTTTCTTTTAAGAAGCCCATCGGCAGTGTCAGTGTTTCTGGCCACAAATTTGTAGGATGCCCCATGCCTTGTGGTGTGCAGATTACAAGATTGCAGCATATCAATGCTCTCTCGAGGAATGTGGAGTATCTAGCTTCTAGAGATGCCACAATAATGGGCAGTCGGAATGGCCATGCTCCCATCTTCCTTTGGTACACCTTAAACCGAAAAGGATACCGAGGTTTCCAGAAAGAAGTACAGAAATGCTTGCGGAATGCACATTACTTAAAGGACCGCCTTAGAGATGCCGGGATTGGTGCAATGCTCAATGAGCTGAGCAGCACAGTTGTATTTGAGCGGCCACATGAAGAGGAGTTTACTCGCAGGTGGCAATTGGCATGCCAAGGGAACATTGCTCATGTCGTAGTGATGCCAAACATTACAATTGAGAAGCTTGACAAATTTCTGGACGAGTTTGTACAGAATCGAGCCACGTGGTTTCAAGATGGGAAATGTAAGCCTCACTGCATTGCGTCTGATGTAGGGGAAAAGAATTGCCTTTGTGCTTTGCACAAGTGA 1494 0.4384 MHLGHYCTTTSKMVRSVDVVADELSTIEAFEPLPEDFDPNAMIKDPVPHTVENNGSVNVGAKMSEDKNKREIVLGRNVHTTCLEVTEPDADDEVTGDREAYMASVLARYRKSLMERTKHHLGYPYNLDFDYGALAQLQHFSINNLGDPFIESNYGVHSRQFEVGVLDWFARLWEIEKSEYWGYITNCGTEGNLHGILVGREVFPDGILYASRETHYSVFKAARMYRMECVKIDTLCSGEIDCDDFKAKILRNKDKPAIVNVNIGTTVKGAVDDLDLVIKTLEEAGFSHDQFYIHCDGALFGLMMPFVKRAPKVSFKKPIGSVSVSGHKFVGCPMPCGVQITRLQHINALSRNVEYLASRDATIMGSRNGHAPIFLWYTLNRKGYRGFQKEVQKCLRNAHYLKDRLRDAGIGAMLNELSSTVVFERPHEEEFTRRWQLACQGNIAHVVVMPNITIEKLDKFLDEFVQNRATWFQDGKCKPHCIASDVGEKNCLCALHK 497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere02g2421 497 FunFam Serine decarboxylase 1 136 379 - -
Dere02g2421 497 Pfam Pyridoxal-dependent decarboxylase conserved domain 207 418 IPR002129 GO:0016830|GO:0019752|GO:0030170
Dere02g2421 497 PANTHER - 61 497 - -
Dere02g2421 497 Gene3D - 136 379 IPR015421 GO:0003824
Dere02g2421 497 Gene3D Aspartate Aminotransferase, domain 1 380 468 IPR015422 GO:0003824
Dere02g2421 497 SUPERFAMILY PLP-dependent transferases 116 466 IPR015424 -
Dere02g2421 497 ProSitePatterns DDC / GAD / HDC / TyrDC pyridoxal-phosphate attachment site. 321 342 IPR021115 GO:0016831
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere02g2421 Dere-ChrDere02 25715499 25718581 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere02g2421 220 403 Calmodulin-binding Proteins AT1G65960 26.425 1.12e-09 58.2