Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere02g2416 ATGATCCCAATTTCCAGGACAAAACGAAGAGGTTTCGCTGAGCGAATCGTTCCGCCACTGTTTAAAATGTCGGAAGTGGACGAGTACCGTTGCTTTATTGGTGGCCTTTCATGGTCAACATCTGATAGAAAGTTGAAGGATACATTTGAAAAGTTTGGCAAGCTTCTTGAGGCAAAGGTGGTTGTTGACAAATTTTCTGGGCGCTCTCGTGGTTTTGGATTTGTCACATTTGATGAAAAGAAAGCAATGGAAGATGCCATTGAGGCTATGAATGGGATGGATTTAGATGGGCGAACTATCACTGTTGATAAAGCCCAGCCTCAACAAGGATCTGCTAGAGATGATGGTGATCGCTATCGTGAACGGGGTCGTGATCGTGATCGTGATCGTAACCGAGATTATGGAGGTAATCGAGGCTCTAATGGTGGTGAGTGCTTTAAATGTGGTAAACCTGGTCATTTTGCTAGAGAGTGTCCTGGTGAAGGAGCAAGAGGTGGCAGGTATGCTGGTAGGGAAAGTAGATATGGTGGCAGCAGTGGTGGTGGTGGTCACTATGGTCCAGACAGGAACACAGATCGTTATTCTGGTGGGCGCAACAGGGACTCTGGTAGCCATGGAGATTCTGGAAGTGAGCGGTACCCTCGTGATCGTGCTGGGCCTTATGAGCGAAGAGGATCAGGAGGCTTTCGTTCTGGATAA 699 0.475 MIPISRTKRRGFAERIVPPLFKMSEVDEYRCFIGGLSWSTSDRKLKDTFEKFGKLLEAKVVVDKFSGRSRGFGFVTFDEKKAMEDAIEAMNGMDLDGRTITVDKAQPQQGSARDDGDRYRERGRDRDRDRNRDYGGNRGSNGGECFKCGKPGHFARECPGEGARGGRYAGRESRYGGSSGGGGHYGPDRNTDRYSGGRNRDSGSHGDSGSERYPRDRAGPYERRGSGGFRSG 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere02g2416 232 PANTHER GLYCINE-RICH RNA-BINDING PROTEIN RZ1A 23 228 - -
Dere02g2416 232 SMART c2hcfinal6 144 160 IPR001878 GO:0003676|GO:0008270
Dere02g2416 232 SUPERFAMILY RNA-binding domain, RBD 22 139 IPR035979 GO:0003676
Dere02g2416 232 Pfam Zinc knuckle 144 159 IPR001878 GO:0003676|GO:0008270
Dere02g2416 232 MobiDBLite consensus disorder prediction 191 223 - -
Dere02g2416 232 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 29 107 IPR000504 GO:0003723
Dere02g2416 232 SMART rrm1_1 30 103 IPR000504 GO:0003723
Dere02g2416 232 FunFam Glycine-rich RNA-binding protein RZ1A 23 140 - -
Dere02g2416 232 ProSiteProfiles Zinc finger CCHC-type profile. 145 159 IPR001878 GO:0003676|GO:0008270
Dere02g2416 232 CDD RRM2_NsCP33_like 30 105 - -
Dere02g2416 232 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 32 101 IPR000504 GO:0003723
Dere02g2416 232 MobiDBLite consensus disorder prediction 98 232 - -
Dere02g2416 232 Gene3D - 141 202 - -
Dere02g2416 232 MobiDBLite consensus disorder prediction 110 135 - -
Dere02g2416 232 SUPERFAMILY Retrovirus zinc finger-like domains 136 162 IPR036875 GO:0003676|GO:0008270
Dere02g2416 232 Gene3D - 21 140 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere02g2416 Dere-ChrDere02 25604669 25608647 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere02g2416 31 141 Eukaryotic Initiation Factors Gene Family AT1G22760 31.532 6.69e-08 50.8