Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere02g2408 ATGAGACATATGGAGAGAGTGATTTCGTTTTTCAAGGGTTCTTTTCTCCTTTGTGCAATTTTAGCTTTTGATTTGGTGCTAAAGGTTTCTGGCAATGCCGAAGGCGATGCCTTGAATGCATTGAAGACCAACGTGGATGATCCAAACGGTGTTCTTCAAAGCTGGGATGCTACCCTTGTAAATCCCTGCACGTGGTTTCATGTTACATGCAATAGTGATAATAGTGTGACCCGTGTTGATCTTGGAAATGCAAACCTCACGGGCCTTCTGGTTCCACAGCTTGGTCAACTCCCAAATTTGCAGTACTTGGAACTTTATAGTAATAATATAAGTGGAAAAATCCCTGCCGAGCTTGGAAATTTGACAAACTTGGTGAGCTTGGATCTATACTTGAATGGCTTAACTGGTCCTATCCCAGACACATTGGGCAAGCTTCAAAAACTGCGCTTCCTGCGTCTCAACAATAATAGTTTGTCAGGTGGCATTCCCATGTCCTTGACTACTGTGGGTTCACTGCAAGTCCTTGATCTTTCAAATAACAAGCTAAAAGGAGAGGTTCCAATCAACGGCTCATTTTCATTGTTTACTCCCATCAGCTATCTAAATAATTCTGGATTAATACAAAAGAATGCTACAGCTCCACCAATTTCTCCAACGCCCGGAACTCCTTCAGGCAGCAGTGCTACTGGAGCTATTGCTGGAGGAGTCGCTGCTGGTGCTGCACTACTGTTTGCAGCCCCTGCAATTGCACTTGCTTATTGTCGGAAAAAGAAACCGCAGGATTATTTCTTTGATGTTCCTGCTGAGGAGGATCCTGAAGTTCACCTTGGTCAGCTTAAAAAGTTTCCCCTGCGTGAGCTGCAAGTTGCAACAGACAACTTTAGTAACAAAAACATTCTGGGTAGAGGTGGGTTTGGTAAAGTTTACAAAGGACGATTAGCTGATGGTTCTCTAGTTGCAGTGAAAAGACTTAAAGAGGAACGCACGCAGGGTGGAGAGCTGCAATTTCAAACAGAAGTGGAAATGATCAGCCTGGCCGTCCATCGTAATTTGCTCCGGCTGCATGGTTTTTGCATGACACCTACTGAACGGTTGCTCGTGTATCCTTTCATGGCTAATGGTAGTGTGGCATCTTGCTTACGAGAGCGCCCGGAATCAAAGCCACCTCTTGAATGGCCTGTAAGGAAGCGAATTGCACTGGGAGCTGCTAGGGGGCTTGCTTATTTGCATGATCACTGTAATCCAAAGATCATTCACCGTGATGTTAAAGCTGCAAATATATTGTTGGATGAAGAATTTGAAGCAGTTGTTGGAGACTTTGGCTTGGCAAAGCTTATGGATTACAAAGATACCCATGTCACCACAGCTGTACGTGGTACGATTGGACACATAGCACCAGAGTACCTCTCAACTGGAAAGTCTTCAGAGAAGACTGATGTTTTTGGATATGGTGTCATGCTTCTTGAACTAATAACTGGACAGAGGGCTTTTGATCTGGCCCGACTTGCCAATGATGATGATGTCATGTTACTTGACTGGGTGAAAGGACTTCTGAAAGACAAAAAGTTGGAAACACTAGTCGATGCTGATTTGAATGGTGATTATAATGAAGAGGAGGTAGAGCAGCTAATCCAAGTAGCCTTATTATGCACACAAAGCTCCGCTATGGAAAGACCAAAGATGTCTGAGGTAGTGAGGATGCTAGAAGGTGATGGGTTGGCTGAAAAATGGGATCAATGGCAGAAAGAGGAGATGTACAGGCAAGATTACAACCAAACCCTTCGCCCCAATGCTATTTGGATAGTAGACTCAGCTTCACATATCCCCCCAGATGAACTGTCAGGTCCAAGATGA 1854 0.4434 MRHMERVISFFKGSFLLCAILAFDLVLKVSGNAEGDALNALKTNVDDPNGVLQSWDATLVNPCTWFHVTCNSDNSVTRVDLGNANLTGLLVPQLGQLPNLQYLELYSNNISGKIPAELGNLTNLVSLDLYLNGLTGPIPDTLGKLQKLRFLRLNNNSLSGGIPMSLTTVGSLQVLDLSNNKLKGEVPINGSFSLFTPISYLNNSGLIQKNATAPPISPTPGTPSGSSATGAIAGGVAAGAALLFAAPAIALAYCRKKKPQDYFFDVPAEEDPEVHLGQLKKFPLRELQVATDNFSNKNILGRGGFGKVYKGRLADGSLVAVKRLKEERTQGGELQFQTEVEMISLAVHRNLLRLHGFCMTPTERLLVYPFMANGSVASCLRERPESKPPLEWPVRKRIALGAARGLAYLHDHCNPKIIHRDVKAANILLDEEFEAVVGDFGLAKLMDYKDTHVTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGVMLLELITGQRAFDLARLANDDDVMLLDWVKGLLKDKKLETLVDADLNGDYNEEEVEQLIQVALLCTQSSAMERPKMSEVVRMLEGDGLAEKWDQWQKEEMYRQDYNQTLRPNAIWIVDSASHIPPDELSGPR 617
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere02g2408 617 ProSiteProfiles Protein kinase domain profile. 294 573 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere02g2408 617 SUPERFAMILY Protein kinase-like (PK-like) 274 569 IPR011009 -
Dere02g2408 617 Gene3D Ribonuclease Inhibitor 31 214 IPR032675 -
Dere02g2408 617 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 20 578 - -
Dere02g2408 617 SUPERFAMILY L domain-like 34 206 - -
Dere02g2408 617 ProSitePatterns Protein kinases ATP-binding region signature. 300 322 IPR017441 GO:0005524
Dere02g2408 617 FunFam Somatic embryogenesis receptor kinase 1 263 370 - -
Dere02g2408 617 FunFam Somatic embryogenesis receptor kinase 1 30 218 - -
Dere02g2408 617 FunFam Somatic embryogenesis receptor-like kinase 1 371 588 - -
Dere02g2408 617 Gene3D Transferase(Phosphotransferase) domain 1 371 588 - -
Dere02g2408 617 ProSitePatterns Serine/Threonine protein kinases active-site signature. 417 429 IPR008271 GO:0004672|GO:0006468
Dere02g2408 617 Pfam Leucine rich repeat N-terminal domain 32 71 IPR013210 -
Dere02g2408 617 Gene3D Phosphorylase Kinase; domain 1 263 370 - -
Dere02g2408 617 SMART serkin_6 294 568 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere02g2408 617 Pfam Protein kinase domain 295 565 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere02g2408 Dere-ChrDere02 25394220 25403041 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere02g2408 20 617 Receptor kinase-like Gene Family AT4G33430 77.196 0.0 949
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Dere02g2408 Pkinase 4.1e-44 CL0016