Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere02g2393 ATGTTGCTTCTCAAGGCCTTTCTATGCCTCTCTCTTATTTCCTTCTTTCCTTTCTTCCATGAGCACCATTATGCTTTAGCAGCTTCTGTTCCTTCAAACCCAGAGACAAAAGAAGCGGAAGCACTTTTAAAATGGAAAACTAGCCTCTCTAGCCAATCTCAAGCTTTCCTTTCTTCATGGTCTCTCTCTGCAAATGATTCAGAAACTACCACAAGCTCCTGCAATTGGTTAGGCATCACTTGCAATGAAGCTGGAAGTATCAGAGGCATAAATTTAACAAGCATTGGCTTGAGAGGTACCTTGAAGGATTTGAGCTTCTCATCTTTAATCAACTTGTCTGTTCTTGATCTTCATGATAATGAGTTGTTTGGAAATGTCCCTTCACACATAAGCAATCTTTCCAAAATCACTATTCTCAATCTGGGTTTCAACCATTTCACAGGAAAAATCCCTCAAGAAGTAGGAAATTTGTTGAAGCTTAATTTGTTGAGCTTCTCAAACAACCTTCTTCATGGTCCTATTCCTTCATCTATTGAAAACTTGACCAATCTTTGTAAACTATACCTTGCCAACAATCAGTTTTCTGGTTTTATCCCTCCAGAACTTGGAAAATTGAAGTCTCTTCTTGAGCTTCGCTTGAATTTAAACAACTTGACCGGATCAATCCCGGCTTCCATTGGAGAATTGGTTGGCGTAAATGTTCTTTCCCTCTACGGAAACCAGCTCTCAGGTCCACTTCCTCAAAAGATCAATAAGCTTACCAACTTGACACTATTTTTCTTGTCAAATAATAGTATATCTGGCCCATTACCAGAAAACATATGCCACGGTGGTATCCTTAAGGATTTTTGTGCAAGCAATAACCATTTTGAAGGAACAGTTCCTAAAGGTTTGAAAAACTGCACTAGCTTAACAAAACTTAGGCTTGACAGGAACAACCTCATGGGAAATGTATCTGAAGACTTTGGGATATACCCAAACCTTGATTACATTGATTTGAGCTACAACAACTTTTATGGCACGGTTTCGCCAAATTGGGGGAAATGTCAGCTTCTTACAAGCTTAAAAATGTCCAACAATCTTATCACTGGAGAGATACCATCAGAGCTTGGAGAATCATTGCTTTTGCATGTGGTGGACCTGTCTTCAAACTATCTTGTGGGAAAAATCCCAAATGAGTTAGGAAACCTGAAATCATTGTTCAATCTTACTTTGATCAAAAACAATCTTTCAGGCACCATTCCTGCAGAACTTGGAACACTGTCAGATCTTGCTTATCTTGATCTTGCAGAAAACGAGTTGAGTGGCCCTATACCCAAAGAGCTAGGTCATTGTTCAAAAATGTACTACCTGAGCTTAAGCAACAACAACTTAAATGGAAGCATTCCAATGGAAATAGGCAACTTGGTATCACTGCAAGTCTTATTGAATTTAAGTAGGAACTTGCTTACCGGTGAAATTCCTTGGCAGTTTGGGAATCTACTCAGATTGGAAGTGTTGGATCTTTCACACAACAAGCTCAGAGGTTCCATACCATCCTCTCTGGAACAAATGCTGAGTTTGAGATCAATGAATTTCTCCTACAATGACTTGGAGGGACCAATTCCAAATAGTAACGCCTTTGAAGAAGCATCCATTGAAATGTTTCAAAGTAATAAAGGTTTGTGTGGGAACCATTCTGGCTTGAAAGGCTGCCCTCCTCTTCAAAATGAGAAGAACCATAGTAGTGTTCTTCTGATTGTTACTCCTATTGTTGGAGCTTCAGTACTACTGAGCATTATAACTTGTGTTAGTTGTATCATGTATAAGGGTAGGAAAAAGAAGGGCAATGAATTGAGAGACTCTGGCCATAGCAATCTGTTTTCCATTTGGAGCTACGATGGGAAACTAGTTTATGAAGATATCAGGGAAGCAACTGAAGGCTTTGATATGAAATACTGCATAGGAGTTGGAGGACATGGAACTGTTTATAAGGCAGATCTCTCAACAGGACAGGCAGTAGCTGTCAAGAAGCTTCATCCTTGTCAGTACTCTGAATCAGAGGATCAGAAAACTTTCAAGAGTGAAATAAGCGCATTGACAAAAATTCGCCACCGAAACATTGTGAAGCTATATGGTTTCTGCTCTCATGCTCAGAAATCCTTTTTGGTGTATGAATACTTGGAGAGAGGAAGTTTAGCCAACATTTTGAAGGATGTAAAACAAGCACAAGACTTGGACTGGATTAAAAGAATCAACATCATCAAAGGGGTCTCCAACGCTCTCTACTACCTCCATCATGATTGCAAACCACCAATACTTCACAGGGACATCACAAGCAGCAATGTACTTCTTGATGCAAAGTATGAACCCCGTGTTTCAGATTTCGGCACAGCTAGACTTGTCAATCTTGATTCTTCAGAGTTGACAAGACTTGCAGGAACCTATGGCTATATGGCTCCAGAGCTTGCTTATACCACGAAAGTGACAGAAAAGTGTGATGTGTTTGGGTTTGGAGTGCTGAGTCTGGAAGTCATTACAGGAAATCATCCTGCTGAACTAGTGTCTTCTGTTTCATATTCACCATCTTCATTGTCATCATCGTCATCATCGTCATCCGAGTCACTAACAAATTTCCAAAACATGTTGCTGAAAGATGTGTTGGACAAGCACCTTGAAGATCCCACCCCTGAAGTTGCTGGGGAAATCATTACCATCATAAAACTAGCATTCTCATGCATAGATGTCAATCCACTGCTTCGACCTACAATGCAGCAAGTGTCACAAAAGCTATCAACTCAAAGGCAGTCTTTCTCTCATGAATTTCAGTGTTACATTAGGACGCCTTCTTAA 2832 0.4004 MLLLKAFLCLSLISFFPFFHEHHYALAASVPSNPETKEAEALLKWKTSLSSQSQAFLSSWSLSANDSETTTSSCNWLGITCNEAGSIRGINLTSIGLRGTLKDLSFSSLINLSVLDLHDNELFGNVPSHISNLSKITILNLGFNHFTGKIPQEVGNLLKLNLLSFSNNLLHGPIPSSIENLTNLCKLYLANNQFSGFIPPELGKLKSLLELRLNLNNLTGSIPASIGELVGVNVLSLYGNQLSGPLPQKINKLTNLTLFFLSNNSISGPLPENICHGGILKDFCASNNHFEGTVPKGLKNCTSLTKLRLDRNNLMGNVSEDFGIYPNLDYIDLSYNNFYGTVSPNWGKCQLLTSLKMSNNLITGEIPSELGESLLLHVVDLSSNYLVGKIPNELGNLKSLFNLTLIKNNLSGTIPAELGTLSDLAYLDLAENELSGPIPKELGHCSKMYYLSLSNNNLNGSIPMEIGNLVSLQVLLNLSRNLLTGEIPWQFGNLLRLEVLDLSHNKLRGSIPSSLEQMLSLRSMNFSYNDLEGPIPNSNAFEEASIEMFQSNKGLCGNHSGLKGCPPLQNEKNHSSVLLIVTPIVGASVLLSIITCVSCIMYKGRKKKGNELRDSGHSNLFSIWSYDGKLVYEDIREATEGFDMKYCIGVGGHGTVYKADLSTGQAVAVKKLHPCQYSESEDQKTFKSEISALTKIRHRNIVKLYGFCSHAQKSFLVYEYLERGSLANILKDVKQAQDLDWIKRINIIKGVSNALYYLHHDCKPPILHRDITSSNVLLDAKYEPRVSDFGTARLVNLDSSELTRLAGTYGYMAPELAYTTKVTEKCDVFGFGVLSLEVITGNHPAELVSSVSYSPSSLSSSSSSSSESLTNFQNMLLKDVLDKHLEDPTPEVAGEIITIIKLAFSCIDVNPLLRPTMQQVSQKLSTQRQSFSHEFQCYIRTPS 943
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere02g2393 943 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 253 569 - -
Dere02g2393 943 SUPERFAMILY L domain-like 52 316 - -
Dere02g2393 943 ProSitePatterns Protein kinases ATP-binding region signature. 648 671 IPR017441 GO:0005524
Dere02g2393 943 SMART LRR_sd22_2 253 276 - -
Dere02g2393 943 SMART LRR_sd22_2 109 135 - -
Dere02g2393 943 SMART LRR_sd22_2 494 517 - -
Dere02g2393 943 SMART LRR_sd22_2 157 183 - -
Dere02g2393 943 Gene3D Transferase(Phosphotransferase) domain 1 721 939 - -
Dere02g2393 943 Pfam Leucine rich repeat N-terminal domain 37 82 IPR013210 -
Dere02g2393 943 Gene3D Ribonuclease Inhibitor 36 159 IPR032675 -
Dere02g2393 943 Gene3D Ribonuclease Inhibitor 160 230 IPR032675 -
Dere02g2393 943 Pfam Leucine rich repeat 476 531 IPR001611 GO:0005515
Dere02g2393 943 ProSiteProfiles Leucine-rich repeat profile. 496 518 IPR001611 GO:0005515
Dere02g2393 943 FunFam Nuclear pore complex protein NUP107 35 200 - -
Dere02g2393 943 Gene3D Phosphorylase Kinase; domain 1 604 720 - -
Dere02g2393 943 SUPERFAMILY L domain-like 299 557 - -
Dere02g2393 943 SUPERFAMILY Protein kinase-like (PK-like) 620 924 IPR011009 -
Dere02g2393 943 Gene3D Ribonuclease Inhibitor 231 568 IPR032675 -
Dere02g2393 943 ProSitePatterns Tyrosine protein kinases specific active-site signature. 766 778 IPR008266 GO:0004672|GO:0006468
Dere02g2393 943 SMART LRR_typ_2 109 133 IPR003591 -
Dere02g2393 943 SMART LRR_typ_2 205 229 IPR003591 -
Dere02g2393 943 SMART LRR_typ_2 421 445 IPR003591 -
Dere02g2393 943 SMART LRR_typ_2 494 518 IPR003591 -
Dere02g2393 943 SMART LRR_typ_2 253 277 IPR003591 -
Dere02g2393 943 SMART LRR_typ_2 181 204 IPR003591 -
Dere02g2393 943 PRINTS Leucine-rich repeat signature 424 437 - -
Dere02g2393 943 PRINTS Leucine-rich repeat signature 494 507 - -
Dere02g2393 943 ProSiteProfiles Protein kinase domain profile. 642 936 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere02g2393 943 PANTHER LEUCINE RICH REPEAT KINASE 2 37 216 - -
Dere02g2393 943 FunFam Leucine-rich repeat receptor protein kinase MSP1 605 720 - -
Dere02g2393 943 FunFam MDIS1-interacting receptor like kinase 2 721 930 - -
Dere02g2393 943 Pfam Protein kinase domain 647 922 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere02g2393 Dere-ChrDere02 25081215 25084646 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere02g2393 109 814 Receptor kinase-like Gene Family AT4G08850 46.369 0.0 624
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Dere02g2393 Pkinase 3.2e-46 CL0016