Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere02g2391 ATGTCTCACTTCGGAAGGTCTGGTCCTCCAGACATCACCGACACCTACTCTCTTCTAGTGCTCAACATCACATTCCGTACAACCGCTGATGACCTGTTTCCGCTGTTCGATAAGTATGGCAAGGTCGTCGACATCTTTATCCCCAGAGATCGAAGGACTGGTGAATCAAGGGGTTTTGCCTTTGTGCGCTATAAGTATGCGGATGAGGCACAAAAGGCAGTGGATAGGCTGGACGGAAGAGTGGTTGATGGCCGGGAAATAACTGTTCAGTTTGCAAAATATGGGCCTAATGCCGAGAGGATCAGTCATAAAGGAAGGATTATTGAAACATTCCCAAAGTCTAGATACAGGTCAAGGAGCCGCAGTCCCAGGAGAAGGTATCGTGATGATTACAGGGACAGGGATTATAGGAGAAGAAGCCGCAGCAGGAGTTATGATAGGCATGAAAGGGACAGGTACCGTGGAAGAGACAGGGATTATCATCGCCGCAGCAGGAGCCGTAGTGCAAGTCCTGATTACCACAAAAGTCGGGGAAGGGGCCGTTATGATGATGAGCATCGTAGCAGAAGCCGGAGCCGATCAGTGGATAGTCGCTCTCCCCCACGACGCAGTCTCAGTCCTCAGAGGAGTCCTTCCCCTAGAAGGAGTGCTTCCCCTCAGAAAAGTATTTCGCCGCGGAGGAGTCCAAGGGGTGAAAGCCCTGAGAGTCGTAGCCGCGATGGACGATCTCCTTCGCCTCGTAGTGTCTCACCACGTGGTCAACCAAATGATTCGCGAAGCCCATCACCTCGAAATTCTAACGGAGATGAATGA 813 0.5141 MSHFGRSGPPDITDTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGESRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFAKYGPNAERISHKGRIIETFPKSRYRSRSRSPRRRYRDDYRDRDYRRRSRSRSYDRHERDRYRGRDRDYHRRSRSRSASPDYHKSRGRGRYDDEHRSRSRSRSVDSRSPPRRSLSPQRSPSPRRSASPQKSISPRRSPRGESPESRSRDGRSPSPRSVSPRGQPNDSRSPSPRNSNGDE 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere02g2391 270 MobiDBLite consensus disorder prediction 112 270 - -
Dere02g2391 270 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 16 94 IPR000504 GO:0003723
Dere02g2391 270 MobiDBLite consensus disorder prediction 243 270 - -
Dere02g2391 270 Gene3D - 4 104 IPR012677 -
Dere02g2391 270 SMART rrm1_1 17 90 IPR000504 GO:0003723
Dere02g2391 270 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 18 88 IPR000504 GO:0003723
Dere02g2391 270 MobiDBLite consensus disorder prediction 123 198 - -
Dere02g2391 270 MobiDBLite consensus disorder prediction 199 227 - -
Dere02g2391 270 SUPERFAMILY RNA-binding domain, RBD 9 100 IPR035979 GO:0003676
Dere02g2391 270 MobiDBLite consensus disorder prediction 228 242 - -
Dere02g2391 270 PANTHER GLYCINE-RICH RNA-BINDING PROTEIN RZ1A 14 243 - -
Dere02g2391 270 SMART rrm2_1 17 90 IPR003954 GO:0003676
Dere02g2391 270 CDD RRM_SRSF2_SRSF8 18 90 - -
Dere02g2391 270 FunFam Serine/arginine-rich splicing factor SC35 4 103 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere02g2391 Dere-ChrDere02 25066970 25070606 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere02g2391 14 92 Eukaryotic Initiation Factors Gene Family AT3G11400 35.443 1.20e-09 56.2