Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere02g2389 ATGGCTTCAGTCGCCACCACCGCACCACCGCCAGCACCGCCGCCACAAGTTCTAAATCTGGAGTGCCTTGCTCGCATAGACACCACAACTCTATCTCAGTCGGAGCTCCATGCCCTCTCTATGTGCTCACTCTCCGCCTTCGACCTCCGCTCTACCACTCACCTTGTTTTCCCCAAAGTCGACCGTTCACTCTTCAATGAGAGTGCTGGCTCACGCCGTCAGACCTACTCTCGACTCCGCAAACCCCAATCTCCTTCCGACTCCCCCACCGGCCACCGCCGCCGCGTTGCCGGGCTTCTTCCCGCTCCAAAGCTCCCTCCAGTCCCCGATGACGACCCAGAAAACTTAGAGAACCGCAAGATTATAGATTATTTGAAGCAAATGATCAGGGAGGACCCTAAATTCGATCAAGTTGAGCTAGCCCCACCTTCTGTTTCCACCGAAATTGTACCAAGTCCCGAATTAAGGGTCAATATAGTGGAGAGAGAGGATGTTGGCTTGCTGAAGTTAGGTGTGGAACGGAAGCGGAAGAGGGGGAGGAAGCCCAAAGTAAAGGTGCATTTGAAGGAGTGCTATAGAGGGATTGGGATTGTGAATAAGAATGGTGTTGCCATTGATCTTTCTGCTTTGGTGAATGCGGAGGATCCCTTTGCTGAGGAGTTGAGGAGAAGGACTGTGGGGTTGCAGAGTGAAGAAGAGCTGTTGGGGTTTTTGAGGGATTTGGGTGGACAATGGGGAAGTAGGAGGAAGAAGAGGAAGATTGTGGATGCCGGTGATTTCGGGGATGTACTGCCAGTTGGTTGGAAGCTTCTGCTAGGTTTGAAGAGAAAAGATGGTCGCGCGTGGATTTATTGCCGCCGATACATAAGTCCTAGTGGACTACAATTTGTATCTTGCAAGGACGTTTCTTCATATCTTCAGTCTGTTTTTGGTTACAATGATGCACAATTACCTATCAATCGTAGGGGTGAAAATATGCTGCTGGAGGATAGAGTGACTACTCAAAGTTCTGCAGGAGTTACCCATGAGGATCAAGATCAAAGAATGATCGATGCAACTGACTCAGCTGTACCCAATTCTTCGAACTGTAATGAACGATTGAAAGAAGTGGCCTTATTGGGGATTGAGAATCTGGCGGAAGTGCAAGTACATGACCTATTTGAATGTCACAAATGTAGCATGACTTTTGATGAGAAGGATTCATACTTGCAGCATCTGTTGTCTTTTCACCAGAGGACAACAAGGCGCTATCGACTTGGTTCTTCTGTTGGAGATGGAGTTATAATTAAAGATGGAAAGTTTGAGTGCCAGTTCTGCCACAAAGTGTTTCTGGAAAGGCGTCGCTACAATGGTCATGTGGGGATCCATGTTAGGAACTATGTGAGGAGAGTGGAAGAATCGCCAGGTCAGGTAAACATTCAAAGGAGAGATAAGTCTCCAATCAAGGATGACTTGCCTTCACGGATCTCTAAGATGGATGCTCTAATTGAAATTGCTCAGAACTCTATTATGGAGAATTCTGCAATGGAAACCCATGGTAACCATGCTTCCTCTCCTGATAAACTGAATGTGAATTCTACTAAAGAAATTTCTGTTCATAACTTAAATCATGACAAAATTTTTGAGTCTCCTCTGAGTGAACAGAAAATGGAAGATATCAACCTTGGCAAAAATATGGATCAAAATTTAAATAAGCAAGATAGTCATGACGCACTCATGGATGAAAAAGTGAAAAAAACTGATGGTTATAACGAAGTTATAGATTCTAAGATAGATACCTGTGTGGATCTCATGGGTTTGTCCACTGTAAATGAGAAAAAGAGTAATGCATCTGAGAACTCTAAGGGAAAAGATGATGTGGCATTGACTGTTGATTTTTTAGATCAGTCTGGGGTTAATTTGGAAGGAGTTCCTCGACGCCCTTTACTTCCTTTATCTGGCAATGGCATAATTCCTGAAGCTGAGGATAATGGAAATTCTGGTGGTGCTAATACAATTGGGCAAGTTAAGATTGATGACGACAATAGAATTAAGAGTGAGTTCAAAATTGGAATTGGTGACACAAAAGATGTATCTGTTAGCTTTGAAATCCAAGAGACAGTAAAGTCAAATTCTGAGGAGAATGTAGTTTCATCTGAGGTTTCAGGCCTGTCCACGTCCACGATGCAATCTTTGGATTGTATTCCCACTCTTACTGGACTCTCAGATAAGGGTGGAAAACAATTTTGCAGTGTTGACCCCAAACATGATAATGTGAATGGATTCCAGGAACTGAGGTTGGATAAAGTAGAACCTCTGAAATGTGATTTTACAAATGGTCAACATTCTCTTTCTCTGCCTCAGGTGCCAACAGATTTGGCAAACAACACAGAGATTGAAGGGGCATATGCTTCCTCAATTCAGCTTGAATCTCAAGAAGGAAGCAAAAATCAGATTACAACTGTGTGTGTATGGTGTGGAATAGAGTTTAATTATGATGCTGTTGATTCTGAAATACAACCAGATTCTGTCGGCTTCATGTGCCCGGCTTGTAAGGCCAAAATATCTGGTCAAATCAATGTGTTGGATGGTGGATCAACCGTGAATCCTGACCATCTTTGA 2601 0.4394 MASVATTAPPPAPPPQVLNLECLARIDTTTLSQSELHALSMCSLSAFDLRSTTHLVFPKVDRSLFNESAGSRRQTYSRLRKPQSPSDSPTGHRRRVAGLLPAPKLPPVPDDDPENLENRKIIDYLKQMIREDPKFDQVELAPPSVSTEIVPSPELRVNIVEREDVGLLKLGVERKRKRGRKPKVKVHLKECYRGIGIVNKNGVAIDLSALVNAEDPFAEELRRRTVGLQSEEELLGFLRDLGGQWGSRRKKRKIVDAGDFGDVLPVGWKLLLGLKRKDGRAWIYCRRYISPSGLQFVSCKDVSSYLQSVFGYNDAQLPINRRGENMLLEDRVTTQSSAGVTHEDQDQRMIDATDSAVPNSSNCNERLKEVALLGIENLAEVQVHDLFECHKCSMTFDEKDSYLQHLLSFHQRTTRRYRLGSSVGDGVIIKDGKFECQFCHKVFLERRRYNGHVGIHVRNYVRRVEESPGQVNIQRRDKSPIKDDLPSRISKMDALIEIAQNSIMENSAMETHGNHASSPDKLNVNSTKEISVHNLNHDKIFESPLSEQKMEDINLGKNMDQNLNKQDSHDALMDEKVKKTDGYNEVIDSKIDTCVDLMGLSTVNEKKSNASENSKGKDDVALTVDFLDQSGVNLEGVPRRPLLPLSGNGIIPEAEDNGNSGGANTIGQVKIDDDNRIKSEFKIGIGDTKDVSVSFEIQETVKSNSEENVVSSEVSGLSTSTMQSLDCIPTLTGLSDKGGKQFCSVDPKHDNVNGFQELRLDKVEPLKCDFTNGQHSLSLPQVPTDLANNTEIEGAYASSIQLESQEGSKNQITTVCVWCGIEFNYDAVDSEIQPDSVGFMCPACKAKISGQINVLDGGSTVNPDHL 866
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere02g2389 866 Gene3D Classic Zinc Finger 375 459 - -
Dere02g2389 866 ProSitePatterns Zinc finger C2H2 type domain signature. 389 410 IPR013087 -
Dere02g2389 866 ProSiteProfiles Zinc finger C2H2 type domain profile. 434 461 IPR013087 -
Dere02g2389 866 ProSitePatterns Zinc finger C2H2 type domain signature. 436 456 IPR013087 -
Dere02g2389 866 SMART c2h2final6 387 410 IPR013087 -
Dere02g2389 866 SMART c2h2final6 434 456 IPR013087 -
Dere02g2389 866 MobiDBLite consensus disorder prediction 68 90 - -
Dere02g2389 866 ProSiteProfiles Methyl-CpG-binding domain (MBD) profile. 254 326 IPR001739 GO:0003677
Dere02g2389 866 PANTHER METHYL-CPG-BINDING DOMAIN-CONTAINING PROTEIN 8 1 624 IPR037472 -
Dere02g2389 866 MobiDBLite consensus disorder prediction 68 115 - -
Dere02g2389 866 SUPERFAMILY DNA-binding domain 262 309 IPR016177 GO:0003677
Dere02g2389 866 ProSiteProfiles Zinc finger C2H2 type domain profile. 387 415 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere02g2389 Dere-ChrDere02 25015843 25020340 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Dere02g2389 None None None