Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere02g2368 ATGGACGTCGGCGAAGACATCACCGATCCAAGTTACTGGGAAAAGCCTATGGCGAGTTTTCTCATACGCCATCACTCGGACCAGCTCCGCTCCATTGCTTCCTCTCCAGATTCCAAGCTTCACTATCCTCTCTTAGTCGATTTCGCAGAGTTGATGGAAGATGACCCTCACCTTGCTCATCTCGTCTTTACCGAACCCGCTACATATTTACAGATATTCGACCAGGCTGCTGTTTGGGCTCATAAAATCATATTGGGAGATTCAGGAGCAGACAAGAAAGGCCTTGAGAAGAAATCGATTCATGTCCGCATCAATACAAGTGGCTCTCCACTTGAATGCCCTGAGACTTTTCCAAGCATAGGACGTGTTAGAGTGAAGCACCGGGGGATTCTTCTAACTCTTAAAGGGACAGTAATCAGGTCAGGAGCAATAAAGATGCATGAAGGAGAGAGGGAGTACATGTGCCTAAAGTGCAAGAAGAGCTTCCTAGTTTATCCTGATGTGGAAGCCCGAAACTCCATCATGCTACCTTCAATTTGCCAAGTTCGGGGGTGTGTACCCTGCGGAGGCACAAAATTCCAGTACGCAGATGATACTATAGTATGCCATGATTATCAGGAGATAAAAATCCAGGAAAGCACACAGGTTCTTGGTGTTGGGGCAATTCCTCGCTCAATTCTTGTCATCTTGAAGGATGATCTTGTTGACATCATTAAAGCAGGAGATGATGTAATTGTCACTGGGGTGTTGAGAGCAAAATGGTCTCCAGAAGTGAAAGATGTGCGCTGTGACCTTGATCCTGTATTAATAGCCAACCATGTAAGGAGAACAAATGAGCTGAAGTCAGAAATTGATATTCCTGATGATATCATTATGAAATTCAAACAATTCTGGGTCCACTTTCAAGACGCCCCTTTAAAAGGGAGGAATGCCATTTTACGAGGAATTTGCCCACAAGTATTTGGACTCTTTACTGTCAAGCTGGCAGTTGCATTAACGCTTATTGGAGGTGTGCAACATGTCCATGCTTCTGGAACAAAGGTGCGAGGGGAGCCCCACTTACTCTTGGTTGGTGATCCTGGCACTGGAAAATCACAGTTTTTGAAATTTGCTGCAAAATTGAGCTGTAGATCTGTAGTTACCACTGGTTTAGGAAGCACTAGTGCAGGATTAACTGTTACTGCAGTGAAAGATGGAGGAGAATGGATGTTGGAAGCTGGAGCACTTGTTCTGGCAGATGGTGGGTTGTGTTGCATAGATGAATTTGATGGTATGAGGGAACATGACAGAGCAACCATACATGAAGCCATGGAACAGCAGACGATAAGTGTTGCCAAAGCTGGTCTTGTTACAACGCTCAGCACTAGAACAACAGTATTTGGTGCTACCAATCCTAAGGGACATTATGATCCTGATCAACCTCTATCTGTCAACACAACACTCTCCGGTCCTTTGTTAAGCAGGTTTGATATAGTCCTCGTTCTCTTGGATACAAAGAATCCGGAATGGGATGCAGTAGTTTCATCTCATATTCTTAATGAGGCAGAAGTAGATAGAACCAGGCATGATGAAGATCTGGAAAATATCTGGCCTCTTCCTACACTCAAGAGGTATATTCACTACGTGAAAGAAACCTTCAAACCAGTCCTTACAAGAGAGGCTGAGATAGTCATCTCCAGTTATTATCAACTCCAAAGGAAATCTGGAACTCATAATGCAGCTAGGACAACTGTTCGCATGCTGGAAAGTTTGGTACGCCTAGCTCAAGCTCATGCAAGGTTGATGTTCAGAAATGAGGTCACTCGATTAGATGCCATCACAGCCATTTTATGCATAGAATCTTCAATGACTACCTCTGCTATAGTGGATTGCATTGGCAATGCTCTTCATTCCAATTTTACGCAAAACCCTGATGAGGAATGTATCCTTTCTAGTTTTCTTTGCAAAACGTAG 1953 0.4393 MDVGEDITDPSYWEKPMASFLIRHHSDQLRSIASSPDSKLHYPLLVDFAELMEDDPHLAHLVFTEPATYLQIFDQAAVWAHKIILGDSGADKKGLEKKSIHVRINTSGSPLECPETFPSIGRVRVKHRGILLTLKGTVIRSGAIKMHEGEREYMCLKCKKSFLVYPDVEARNSIMLPSICQVRGCVPCGGTKFQYADDTIVCHDYQEIKIQESTQVLGVGAIPRSILVILKDDLVDIIKAGDDVIVTGVLRAKWSPEVKDVRCDLDPVLIANHVRRTNELKSEIDIPDDIIMKFKQFWVHFQDAPLKGRNAILRGICPQVFGLFTVKLAVALTLIGGVQHVHASGTKVRGEPHLLLVGDPGTGKSQFLKFAAKLSCRSVVTTGLGSTSAGLTVTAVKDGGEWMLEAGALVLADGGLCCIDEFDGMREHDRATIHEAMEQQTISVAKAGLVTTLSTRTTVFGATNPKGHYDPDQPLSVNTTLSGPLLSRFDIVLVLLDTKNPEWDAVVSSHILNEAEVDRTRHDEDLENIWPLPTLKRYIHYVKETFKPVLTREAEIVISSYYQLQRKSGTHNAARTTVRMLESLVRLAQAHARLMFRNEVTRLDAITAILCIESSMTTSAIVDCIGNALHSNFTQNPDEECILSSFLCKT 650
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere02g2368 650 PRINTS Mini-chromosome maintenance (MCM) protein family signature 485 493 IPR001208 GO:0003677|GO:0005524|GO:0032508
Dere02g2368 650 PRINTS Mini-chromosome maintenance (MCM) protein family signature 407 421 IPR001208 GO:0003677|GO:0005524|GO:0032508
Dere02g2368 650 PRINTS Mini-chromosome maintenance (MCM) protein family signature 435 448 IPR001208 GO:0003677|GO:0005524|GO:0032508
Dere02g2368 650 PRINTS Mini-chromosome maintenance (MCM) protein family signature 349 364 IPR001208 GO:0003677|GO:0005524|GO:0032508
Dere02g2368 650 SMART mcm 116 617 IPR031327 GO:0003677|GO:0005524|GO:0032508
Dere02g2368 650 Pfam MCM OB domain 123 252 IPR033762 -
Dere02g2368 650 Pfam MCM AAA-lid domain 534 615 IPR041562 -
Dere02g2368 650 PANTHER DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER 26 622 IPR031327 GO:0003677|GO:0005524|GO:0032508
Dere02g2368 650 Gene3D - 123 252 IPR012340 -
Dere02g2368 650 Gene3D - 299 621 IPR027417 -
Dere02g2368 650 SUPERFAMILY Nucleic acid-binding proteins 41 257 IPR012340 -
Dere02g2368 650 Pfam MCM P-loop domain 310 513 IPR001208 GO:0003677|GO:0005524|GO:0032508
Dere02g2368 650 CDD MCM9 311 615 - -
Dere02g2368 650 ProSiteProfiles MCM family domain profile. 308 511 IPR001208 GO:0003677|GO:0005524|GO:0032508
Dere02g2368 650 Gene3D - 147 203 - -
Dere02g2368 650 SMART AAA_5 350 499 IPR003593 GO:0016887
Dere02g2368 650 FunFam Probable DNA helicase MCM9 286 620 - -
Dere02g2368 650 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 318 625 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere02g2368 Dere-ChrDere02 24533566 24549892 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere02g2368 5 643 Core DNA Replication Machinery Family AT2G14050 75.078 0.0 996