Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere02g2353 ATGGCAGAAGGAAAGGAGGCATTGGGCAAGCAAAAAGTCCCCTTTCACAAGCTCTTTTCTTTTGCGGACTCTCGGGACGTGACGCTCATGATCATTGGTTCGATCTGTGCCGTGGTTAATGGGTTATCTCAGCCTCTCATGACAGTGATTTTCGGGAAGCTCATCAACACTTTTGGTTCGACTGATCGTTCACGCATTGTGCATGAAGTCTCTAAGGTTGCATTACTCTTTGTATACCTGGCTATTGGTTCCGGAATTGCTTCATTTCTCCAGGTAGCATGTTGGATGGTGACCGGAGAAAGGCAAGCTGCACGGATCCGTGGCTTGTACTTGAAAACAATATTAAGACAGGACATTTCCTTCTTTGACACTGAAACGACCACAGGGGAAGTCATTGGTAGGATGTCTGGTGATACCATTCTCATTCAAGATGCCATGGGAGAAAAGGTGGGGAAGTTTATACAACTTGCTTCAACTTTTATTGGTGGTTTTGTGGTTGCCTTTACAAAAGGATGGCAACTCGCTCTAGTTTTGCTTTCATGTGTTCCTTGTGTTGTCATTGCTGGTGGAATCGTGTCAATTATGATGGCAAAAATGTCAAGTCGTGGGCAAATTGCTTATGCAGAAGCAGGAAATGTGGTAGAACAAACAGTTGGAGCCATTAGAACAGTTGCATCTTTCACTGGGGAGAAGCAGGCAGTGGAGAAGTATAATGTCAAGTTGAAAGTTGCATATAAAACAATGGTTAAACAAGGGATGGCCTCAGGGCTCGGATTCGGAGTAGTTTTGTTCATTGTCTTCAGCACCTATGGACTTGCCATGTGGTATGGAGCCAAATTGATCATTGAGAAAGGATACAATGGTGGAGCTGTCATAAATATAATCATGGCGCTTATGACAGGTGGAATGTCACTCGGACAAACATCCCCAAGTCTTAATGCATTTGCAGCTGGTCAAGCTGCAGCATATAAGATGTTTGAGACTATTAGAAGAAGACCCAAAATTGATGCCTATGACACTAATGGGGTTGTCTTGGAGGACATAAAGGGAGATATCGAACTCAAAGATGTTTATTTCAGATACCCTGCGAGGCCAGATGTGCAGATTTTTGCTGGATTCTCACTGTATGTTCCAAGTGGGACAACTACTGCTTTAGTGGGTCAAAGTGGAAGTGGAAAGTCAACTGTAATAAGTTTATTAGAAAGATTCTATGACCCTGATGCTGGTGAAGTACTTATAGATGGTGTTAATCTGAGGAACTTTCAACTTAGATGGATAAGAGAAAAGATTGGTCTTGTTAGTCAAGAGCCAATCTTGTTTACAGGTACCATCAAAGAGAATATAGCATATGGTAAAGAAGGTGCAACCGATGTGGAAATAACTACAGCAACAAAGCTTGCCAATGCTGCAAAATTTATTGACAAACTCCCGAAAGGCCTTGACACGATGGTAGGGGAGCATGGAACTCAACTTTCTGGGGGACAAAAGCAAAGGATTGCCATTGCAAGGGCAATTTTGAAGAACCCTAAAATCCTCCTTCTTGATGAAGCAACAAGTGCACTAGATGCTGAGTCAGAACGTATTGTTCAAGATGCACTGGTAAATGTCATGTTAAATAGGACCACTGTGGTTGTTGCTCATCGTTTGACAACTATTAGAAATGCTGATGCCATAGCGGTGGTGAATCAAGGGAAAATAGTGGAACAAGGAAATCATGATGAGTTAATCAAGAATCCCAATGGTGCTTATTCTCAGCTTGTTCGTCTCCAAGAAGGTGCTAACGAAGCTGGAGCTGAAGAAACATCTGAAACTGATAAGGCCACTACCAATTTTAATTTAGATAGAAAAATGTCTTCTTCTGAGAACCAGACACCATCAAGCTTGAGATCAATAAGCTGGGCTTCATCAGGAAGCAAACATTCATTCTCACTTAGCCTTGGCCTTCCAAATCAAATTGATATATATCAACCTAATGATCTTGAAAAAACTGAATTTGATAATGAGAAACAGCGAGAGGTTTCTATTAGACGTTTGGCCTACTTGAATAAGCCTGAGATTCCAGTCCTATTACTTGGATCTGTTGCTGCTGCCATACATGGTCTTGTTTTCCCTATATTTGGCCTCCTACTCTCATCAGCTATTAGAATGTTATATAAACCTCCAGAACAAATGAAGAAAGAATCTAGGTTTTGGGGACTTCTTTATGTGATTTTGGGTTTGGTTACCTTAGCCTGTTTACCAGTGCAAAATTACTTCTTTGGGATTGCTGGTGGAAAGTTAATAGAACGAATTCGTTCTTTGACATTTAAGAAAATTGTGCACCAACAAATTAGTTGGTTTGATGATCCTGCAAATTCAAGTGGTGCAGTTGGTGCACGATTATCTACAGATGCTTCGACAGTGAGAAGTCTTGTTGGTGACACCTTAGCGCTCATTGTGCAAAACATAGCAACTATAACAACAGGCCTTATTATAGCATTTGTAGCTAATTGGAGACTCTCTTTAATAGTGCTTGCCGTGTCACCTTTAATTCTAATGCAAGGAGTATTTCAGATGAGGTTTCTTAAAGGGTTCAGTGCAGATGCTAAGGTGATGTATGAGGAAGCCAGTCAGGTGGCAAATGATGCAGTTGGTAGCATTAGAACTGTTGCATCATTTTGTGCTGAACCAAAGGTCATGGATATGTACAGCAAGAAATGTGAGGGGCCTGAAAAGCAAGGCATTCGACTAGGTGTTGTTAGCGGTGCAGGTTTGGGTTTCTCCTTCTTTGCTTTATACTGCACAAATGCTTTATGTTTCTACATAGGAGCTATCTTTGTAAAGCAAGGGAAAGCAACCTTTGGAGAGGTTTTCAAGGTTTTCTTTGCTTTAACAATTACAGCAATTGGGGTTTCCCAGACTAGTGCCTTGGCACCAGACACCAATAAGGCCAAGGATTCCACAGCTTCAATATTTGATATTCTAGACAGCAAGCCTAGCATTGACTCTAGTAGCGATGAGGGCATGGCATTAGAATCTGTAAATGGTGATATTGAACTTAAAAATGTTAGCTTCAAGTACCCAACAAGGCCTGATATTCAAATTTTCAGAGATTTATGTCTAACCATACCCTCTGGGAAGACCGTCGCTTTGGTTGGAGAAAGTGGCAGTGGAAAATCAACAGTTATAAGTCTCCTTGAGAGATTTTATGACCCTGATTCTGGACATGTACTACTTGATGGAATTGATGTCAAGAAGTTCAGACTGAGCTGGTTAAGGCAGCAAATGGGTTTGGTTAGTCAAGAGCCAATTCTTTTCAACGAAACCATCCGTGACAACATAGCTTATGGCAAAACGGGAGGTGCTAGCGAGGAAGAGATAGTTGCAGCAGCCAAAGCAGCCAATGCACACAAGTTCATAAGTTCTCTTCCAAGTGGTTTTGACACCTTTGTGGGGGAAAGAGGCACACAATTGTCAGGAGGGCAAAAGCAAAGGATAGCAATTGCCAGAGCCATATTGAAAAACCCAAAAATCCTTTTACTTGATGAGGCAACCAGTGCACTAGATGCAGAGTCAGAGCGTATAGTTCAAGAGGCTTTAGACAACGTTATGGTGAACAGAACCACCATAGTGGTAGCTCATCGCCTTACAACAATCAAAGGGGCCGACATTATTGCAGTGGTGAAGAATGGGGTGATTGCTGAGAAGGGAAGACATGATGTGTTGATGAAGATTACTGATGGAGTTTATGCTTCATTGGTGGCTCTCCATATGAGTTCATCATAA 3765 0.4175 MAEGKEALGKQKVPFHKLFSFADSRDVTLMIIGSICAVVNGLSQPLMTVIFGKLINTFGSTDRSRIVHEVSKVALLFVYLAIGSGIASFLQVACWMVTGERQAARIRGLYLKTILRQDISFFDTETTTGEVIGRMSGDTILIQDAMGEKVGKFIQLASTFIGGFVVAFTKGWQLALVLLSCVPCVVIAGGIVSIMMAKMSSRGQIAYAEAGNVVEQTVGAIRTVASFTGEKQAVEKYNVKLKVAYKTMVKQGMASGLGFGVVLFIVFSTYGLAMWYGAKLIIEKGYNGGAVINIIMALMTGGMSLGQTSPSLNAFAAGQAAAYKMFETIRRRPKIDAYDTNGVVLEDIKGDIELKDVYFRYPARPDVQIFAGFSLYVPSGTTTALVGQSGSGKSTVISLLERFYDPDAGEVLIDGVNLRNFQLRWIREKIGLVSQEPILFTGTIKENIAYGKEGATDVEITTATKLANAAKFIDKLPKGLDTMVGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSALDAESERIVQDALVNVMLNRTTVVVAHRLTTIRNADAIAVVNQGKIVEQGNHDELIKNPNGAYSQLVRLQEGANEAGAEETSETDKATTNFNLDRKMSSSENQTPSSLRSISWASSGSKHSFSLSLGLPNQIDIYQPNDLEKTEFDNEKQREVSIRRLAYLNKPEIPVLLLGSVAAAIHGLVFPIFGLLLSSAIRMLYKPPEQMKKESRFWGLLYVILGLVTLACLPVQNYFFGIAGGKLIERIRSLTFKKIVHQQISWFDDPANSSGAVGARLSTDASTVRSLVGDTLALIVQNIATITTGLIIAFVANWRLSLIVLAVSPLILMQGVFQMRFLKGFSADAKVMYEEASQVANDAVGSIRTVASFCAEPKVMDMYSKKCEGPEKQGIRLGVVSGAGLGFSFFALYCTNALCFYIGAIFVKQGKATFGEVFKVFFALTITAIGVSQTSALAPDTNKAKDSTASIFDILDSKPSIDSSSDEGMALESVNGDIELKNVSFKYPTRPDIQIFRDLCLTIPSGKTVALVGESGSGKSTVISLLERFYDPDSGHVLLDGIDVKKFRLSWLRQQMGLVSQEPILFNETIRDNIAYGKTGGASEEEIVAAAKAANAHKFISSLPSGFDTFVGERGTQLSGGQKQRIAIARAILKNPKILLLDEATSALDAESERIVQEALDNVMVNRTTIVVAHRLTTIKGADIIAVVKNGVIAEKGRHDVLMKITDGVYASLVALHMSSS 1254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere02g2353 1254 MobiDBLite consensus disorder prediction 591 631 - -
Dere02g2353 1254 SUPERFAMILY ABC transporter transmembrane region 672 995 IPR036640 GO:0005524|GO:0016020
Dere02g2353 1254 MobiDBLite consensus disorder prediction 603 631 - -
Dere02g2353 1254 SMART AAA_5 1038 1231 IPR003593 GO:0016887
Dere02g2353 1254 SMART AAA_5 379 565 IPR003593 GO:0016887
Dere02g2353 1254 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 31 317 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Dere02g2353 1254 CDD ABC_MTABC3_MDL1_MDL2 1011 1247 - -
Dere02g2353 1254 CDD ABC_6TM_Pgp_ABCB1_D1_like 30 313 - -
Dere02g2353 1254 FunFam Os01g0533900 protein 669 977 - -
Dere02g2353 1254 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 690 976 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Dere02g2353 1254 FunFam ABC transporter B family member 1 1001 1251 - -
Dere02g2353 1254 ProSitePatterns ABC transporters family signature. 1151 1165 IPR017871 GO:0005524|GO:0016887
Dere02g2353 1254 SUPERFAMILY ABC transporter transmembrane region 16 336 IPR036640 GO:0005524|GO:0016020
Dere02g2353 1254 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1000 1249 IPR027417 -
Dere02g2353 1254 FunFam ABC transporter B family member 9 17 347 - -
Dere02g2353 1254 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 341 590 IPR027417 -
Dere02g2353 1254 Gene3D - 1001 1253 IPR027417 -
Dere02g2353 1254 Gene3D ABC transporter type 1, transmembrane domain 76 979 IPR036640 GO:0005524|GO:0016020
Dere02g2353 1254 Pfam ABC transporter 373 519 IPR003439 GO:0005524
Dere02g2353 1254 Pfam ABC transporter 1031 1179 IPR003439 GO:0005524
Dere02g2353 1254 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 352 588 IPR003439 GO:0005524
Dere02g2353 1254 PANTHER ABC TRANSPORTER B FAMILY 9 591 IPR039421 -
Dere02g2353 1254 Pfam ABC transporter transmembrane region 30 302 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Dere02g2353 1254 Pfam ABC transporter transmembrane region 690 961 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Dere02g2353 1254 CDD ABC_MTABC3_MDL1_MDL2 352 590 - -
Dere02g2353 1254 Gene3D - 350 623 IPR027417 -
Dere02g2353 1254 FunFam ABC transporter B family member 1 342 591 - -
Dere02g2353 1254 ProSitePatterns ABC transporters family signature. 491 505 IPR017871 GO:0005524|GO:0016887
Dere02g2353 1254 CDD ABC_6TM_Pgp_ABCB1_D2_like 679 994 - -
Dere02g2353 1254 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1011 1248 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere02g2353 Dere-ChrDere02 24184143 24189520 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere02g2353 13 1250 Calmodulin-binding Proteins AT2G36910 46.006 0.0 1088