Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere02g2337 ATGAGCTTCTCAACATCAGCTGCCAGCAACATAAAGACCAACACCAACACTGCCAACAGAGACAAAGCAATTGCCCAGTACAGTGCCGATGCTGGGATTTTGGCCGAGTTTGGGCGTTCTACTGCGTCTGGCGAATCATTCGACTATGCGAGGTCGGTGCTTCACCCTCCACAATCGGTGTCGGAGGAGAAAATGACGGCTTATCTGTTAAATATCCAGAGAGGGGGTCTCATTCAGCCCTTTGGTTGCATGCTTGCAATTGAAGAAGCCACTTTCAGAATTTTCAGCTACAGTGAGAATTGCTTTGAAATGTTGAGTTTAGAGAGACAATCTGATTCGACACAATTTGCGGGTCTGATTGGAGTTGATGTCACGACCCTGTTCACGCCTTCTTCTGGGGCTTCCCTTGTAAAAGCTGCAACTTCAAAGGAAATTTCACTTTTGAACCCGATTTGGGTCTATTCAAGGATAACTCAGAAGCCATTCTATGCAATATTGCATAGGATTGATGTGGGGATTATTATTGATTTAGAGCCTGCCCGGTCGAGTGATCCTGCATTGTCACTTGCTGGAGCAGTACAGTCACAGAAACTTGCTGTGCGGGCAATTTCAAGGTTGCAATCTCTTCCAGTGGGAGATATTGGCGTGTTGTGTGACAAGGTCGTTGAAGAAGTGCAGAAGCTAACTGGATATGACAGAGTTATGGTCTATAAGTTCCACGAGGATGATCACGGTGAAGTTGTATCAGAAATTAGGAGGTCAGATTTGGAGCCCTATTTGGGTTTGCATTATCCTGCCACGGATATCCCTCAAGCTGCTCGCTTCTTATTTAAGCAAAACCGGGTCAGGATGATATGTGATTGCCATGCAAAACCAGTTAAGGTCATTCAGAGTGAAGAATTAAGGCAACCCCTTTGCTTGGTCAATTCAACCCTTCGGTCACCACATGGATGTCACACACAGTACATGGCAAATATGGGCTCTATTGCCTCTCTGGTGATGGCAGTTATAGTAAATGATAATGATACAACAAAGCTTTGGGGTTTGCTAGTTTGCCATCACACTTCGCCACGCCACGTGCCTTTCCCCCTTCGCTATGCTTGTGAGTTCCTCATGCGGGCTTTTGGACTGCAGCTTTACATGGAGATGCAACTAGCATCACAAATGGCAGAGAAGAGAATACTCAGAACTCAGACCTTACTTTCTGATATGCTCCTCCGTGATGCCCCATTAGGTATTGTTACTCAATCTCCCAGTATCATGGATCTTGTGAAGTGTGATGGGGCAGCATTATATTATGGTGGTGATTGTTGGCTGTTAGGCACTACCCCTACTGAATCACAGGTAAACGACATTGCAGAATGGCTGCTTAGTAATCATGGGGACTCAACAGGTTTGAGCACTGAAAGTTTGGCTGAAGCTGGTTATCCAGGTGCTGCTTTACTGGGGAAGGCAGTTTGTGGCATGGCCACAGCAAGAATTAATATGAGAGATTTCTTGTTCTGGTTCAGATCTAATTCTGCTAAGGAAGTTAAATGGGGAGGAGCCAAGTATCATGCAGAGGATAAAGATGGTGGAGGAAAAATAAACCCTAGATCATCATTTAAAGCCTTCCTTGAAGTAGCCAAAGGCAAAAGCATGCCTTGGGAAGTGTCAGAAATCAATGCTATTCACTCATTACAGCTTATAATGAGAGAATCATTCCAAGACACAGAGACTTTTGGTCATAAGACTCTTAGTTATGCTCAGCATAGTAATACTGGAATGGGTGGGATGGATGAACTCAGTTCAGTGGCATTTGAAATGGTTAGATTAATTGAAACAGCAACGGTTCCAATTTTTGGAGTTAATTCAGCTGGTCAAATCAATGGATGGAATGCGAAAATTGCTGAATTGACAGGGTTGCTCGCCAGTGAAGCTAAGGGAAAATCCCTAGTAAATGAAGTGGTCCATGATGACTCCCGTGAAACTGTTGAAAATATTCTAAGCAGAGCCTTGCAAGGTCAGGAAGACAAAAATGTTGAGTTGAAACTAAAACATTTTGGGCTTCATCAACAAAAGTCAGTTGTATATATCATGGCTAATGCCTGTACAAGTAGGGATTACACGAATGCTGTTGTTGGGGTATGTATCGTGGGTCAAGATATCACTTATGAAAAGGTTTTCCAGAACAAATTTATCAAATTGGAAGGCGATTACAAAGCTATCATCCAGAGTCTCAATCCATTGATTCCACCTATATTTGCTTCTGACGAGAATGCCTGCTGCTCTGAATGGAATGCAGCCATGGAAGGGCTAACTGGTTGGAAGAGAGATGAAGTTATAGGGAAAATGCTTCCAGGGGAAATCTTTGGAGGTTTATGTCAACTGAAAAGTCAAGATTCACTGATCAATTTTATGATTTCATTATATAGAGGAATCAGTGGCCAAGATTCTGAGAAGTTCTCATTTGGATTTTTTAATAGAAATGGAGAATTTGTAGAGGTTTTCTTAACAGCAAACAAGAGGAATGATGCTGGTGGGAACGTAATTGGCTGTTTCTGCTTCTTGCAGATTGTATCACTAGACCCACATCAGCCCTCAGAAGGACACAAGTCTGAGTGTAAGGCAAGCTTTTCTAAATTTAAGGAGTTGGCTTATATGCTTCAAGAGATGAAGAATCCTTTAAATGGTATGCGCTTCACACACAAAATTTTGGAGAATACTGCTGTCTCAGAAAATCAAAAACAATTTCTTGACATTAGCGATGCATGTGAGAGACAGATCATGTCAATTATTGAGGACACAGATTTAGGAAGCATCGACGAGGGCACTGTGAAGCTAAACATGGAAGAATTTCTTCTGGGAAATATATTAGATGCTATTGTCAGTCAAGTCATGATCTTGATAAGACAGAAAAACTTGCAGCTGTTTCATGAGATTCCTGATGAAATCAAGACACTTACTTTATACGGTGATCAAATTAGGCTTCAAATGGTCTTGTCTGACTTTTTGCTTAATGTGGTCAACCATACACCATCTCCTAATGGCTGGGTAGAAATTAAGATTTTACCTGGCTTAAAGATAATACAAGACGGCGATGAGTTTATCCATCTGCAGTTCAGAATGACGCATGCTGGTCATGGTCTTCCTCCTGCTGTTCTTCAAGATATGTTTGAAGCAGAGAATCAATGGACTACACATGAAGGTCTAGGGCTATATATGTCACGGAAAATCCTCAATAGGATGAAAGGTGATGCCCACTATGTAAGAGAACATAACAAGGGCTACTTCCTCATTGATCTTGAACTTAGGACAAGAAAAGAAAGGCAAAGTAATTTGCAAGCAGAGACAAGCATGTTAACATGGCTTTATTCTCAGCAAAGAACTGTCTAA 3375 0.4201 MSFSTSAASNIKTNTNTANRDKAIAQYSADAGILAEFGRSTASGESFDYARSVLHPPQSVSEEKMTAYLLNIQRGGLIQPFGCMLAIEEATFRIFSYSENCFEMLSLERQSDSTQFAGLIGVDVTTLFTPSSGASLVKAATSKEISLLNPIWVYSRITQKPFYAILHRIDVGIIIDLEPARSSDPALSLAGAVQSQKLAVRAISRLQSLPVGDIGVLCDKVVEEVQKLTGYDRVMVYKFHEDDHGEVVSEIRRSDLEPYLGLHYPATDIPQAARFLFKQNRVRMICDCHAKPVKVIQSEELRQPLCLVNSTLRSPHGCHTQYMANMGSIASLVMAVIVNDNDTTKLWGLLVCHHTSPRHVPFPLRYACEFLMRAFGLQLYMEMQLASQMAEKRILRTQTLLSDMLLRDAPLGIVTQSPSIMDLVKCDGAALYYGGDCWLLGTTPTESQVNDIAEWLLSNHGDSTGLSTESLAEAGYPGAALLGKAVCGMATARINMRDFLFWFRSNSAKEVKWGGAKYHAEDKDGGGKINPRSSFKAFLEVAKGKSMPWEVSEINAIHSLQLIMRESFQDTETFGHKTLSYAQHSNTGMGGMDELSSVAFEMVRLIETATVPIFGVNSAGQINGWNAKIAELTGLLASEAKGKSLVNEVVHDDSRETVENILSRALQGQEDKNVELKLKHFGLHQQKSVVYIMANACTSRDYTNAVVGVCIVGQDITYEKVFQNKFIKLEGDYKAIIQSLNPLIPPIFASDENACCSEWNAAMEGLTGWKRDEVIGKMLPGEIFGGLCQLKSQDSLINFMISLYRGISGQDSEKFSFGFFNRNGEFVEVFLTANKRNDAGGNVIGCFCFLQIVSLDPHQPSEGHKSECKASFSKFKELAYMLQEMKNPLNGMRFTHKILENTAVSENQKQFLDISDACERQIMSIIEDTDLGSIDEGTVKLNMEEFLLGNILDAIVSQVMILIRQKNLQLFHEIPDEIKTLTLYGDQIRLQMVLSDFLLNVVNHTPSPNGWVEIKILPGLKIIQDGDEFIHLQFRMTHAGHGLPPAVLQDMFEAENQWTTHEGLGLYMSRKILNRMKGDAHYVREHNKGYFLIDLELRTRKERQSNLQAETSMLTWLYSQQRTV 1124
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere02g2337 1124 Gene3D PAS domain 745 856 - -
Dere02g2337 1124 Gene3D - 388 561 IPR043150 -
Dere02g2337 1124 CDD HisKA 878 928 IPR003661 GO:0000155|GO:0007165
Dere02g2337 1124 SMART HisKA_10 873 937 IPR003661 GO:0000155|GO:0007165
Dere02g2337 1124 Gene3D - 913 1093 IPR036890 -
Dere02g2337 1124 Gene3D - 194 544 IPR029016 -
Dere02g2337 1124 ProSitePatterns Phytochrome chromophore attachment site signature. 313 322 IPR013516 -
Dere02g2337 1124 ProSiteProfiles PAS repeat profile. 732 784 IPR000014 -
Dere02g2337 1124 Pfam His Kinase A (phospho-acceptor) domain 877 937 IPR003661 GO:0000155|GO:0007165
Dere02g2337 1124 ProSiteProfiles PAS repeat profile. 598 669 IPR000014 -
Dere02g2337 1124 NCBIfam PAS domain S-box protein 605 723 IPR000014 -
Dere02g2337 1124 SUPERFAMILY GAF domain-like 193 379 - -
Dere02g2337 1124 CDD PAS 743 851 IPR000014 -
Dere02g2337 1124 SMART HKATPase_4 985 1099 IPR003594 -
Dere02g2337 1124 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 941 1090 IPR036890 -
Dere02g2337 1124 Gene3D PAS domain 600 720 - -
Dere02g2337 1124 FunFam Phytochrome 594 726 - -
Dere02g2337 1124 PIRSF Phytochrome_conventional 1 1106 IPR012129 GO:0006355|GO:0009585|GO:0009881|GO:0017006|GO:0042803
Dere02g2337 1124 SUPERFAMILY PYP-like sensor domain (PAS domain) 746 848 IPR035965 -
Dere02g2337 1124 Gene3D PAS domain 72 316 - -
Dere02g2337 1124 SUPERFAMILY PYP-like sensor domain (PAS domain) 604 712 IPR035965 -
Dere02g2337 1124 SMART gaf_1 213 393 IPR003018 GO:0005515
Dere02g2337 1124 PRINTS Phytochrome signature 313 334 IPR001294 GO:0006355|GO:0009584
Dere02g2337 1124 PRINTS Phytochrome signature 620 635 IPR001294 GO:0006355|GO:0009584
Dere02g2337 1124 PRINTS Phytochrome signature 694 711 IPR001294 GO:0006355|GO:0009584
Dere02g2337 1124 PRINTS Phytochrome signature 498 517 IPR001294 GO:0006355|GO:0009584
Dere02g2337 1124 PRINTS Phytochrome signature 128 150 IPR001294 GO:0006355|GO:0009584
Dere02g2337 1124 PRINTS Phytochrome signature 413 433 IPR001294 GO:0006355|GO:0009584
Dere02g2337 1124 PRINTS Phytochrome signature 531 549 IPR001294 GO:0006355|GO:0009584
Dere02g2337 1124 PRINTS Phytochrome signature 601 617 IPR001294 GO:0006355|GO:0009584
Dere02g2337 1124 PRINTS Phytochrome signature 228 247 IPR001294 GO:0006355|GO:0009584
Dere02g2337 1124 PRINTS Phytochrome signature 714 734 IPR001294 GO:0006355|GO:0009584
Dere02g2337 1124 FunFam Phytochrome 745 853 - -
Dere02g2337 1124 FunFam Phytochrome 388 521 - -
Dere02g2337 1124 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 985 1089 IPR003594 -
Dere02g2337 1124 SUPERFAMILY PYP-like sensor domain (PAS domain) 72 182 IPR035965 -
Dere02g2337 1124 Pfam PAS fold 67 180 IPR013654 GO:0006355
Dere02g2337 1124 PANTHER OS08G0260000 PROTEIN 64 934 - -
Dere02g2337 1124 CDD HATPase_Phy-like 984 1097 IPR044767 -
Dere02g2337 1124 CDD PAS 609 716 IPR000014 -
Dere02g2337 1124 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 213 373 IPR016132 -
Dere02g2337 1124 Pfam PAS fold 601 716 IPR013767 GO:0006355
Dere02g2337 1124 Pfam PAS fold 732 851 IPR013767 GO:0006355
Dere02g2337 1124 ProSiteProfiles Histidine kinase domain profile. 880 1099 IPR005467 -
Dere02g2337 1124 Pfam GAF domain 213 382 IPR003018 GO:0005515
Dere02g2337 1124 Pfam Phytochrome region 397 571 IPR013515 GO:0006355|GO:0009584
Dere02g2337 1124 SMART pas_2 600 667 IPR000014 -
Dere02g2337 1124 SMART pas_2 731 801 IPR000014 -
Dere02g2337 1124 SUPERFAMILY GAF domain-like 391 569 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere02g2337 Dere-ChrDere02 23915016 23920161 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere02g2337 4 1099 Histidine Kinase Gene Family AT4G18130 63.177 0.0 1462