Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere02g2336 ATGTTGTCTTTCTCTCTCTCAATCATTTTCTGCCCCTTTTCACTCGTCTTGCCCAATCATCTCTCCGCTCTTGCTCGCCACCATGCTCTTCCTTACACAAAAGATTCCCCATTGGGCTGCCACAGGAAAGTAGAAGAAATAATACCCATTTGGTTTTGGGGTGACCGCGTACCTAGCTCTTTTCGTCCCAGTCTATTTGTCTTCTTTGAAACTCTAGGGTTTGCTGATTTTGCATCTTCATTTCGGAAGGTTGATGCAATGAAGCAGTCTTTTGATATTTCAGCTTCTGGCCCTACCAAGATTCCATCTATAAATATACCTAAAGAAGTGTGGCGCAGTACGTGGGATGTTTTACCTGGATCTGATGTCTACCATGCGTCTTCTGATGCTACCCTTTTTTCTAGCTCATTACCTGTTTTGCCACATGAAAAGTTGAATTTGAATGACACTGAAAATGAGTATCAATCTGTGGACGACATTCCATCTGGCTTTAAAAAGCTCCACCAAGATTTGGAGGTTAATGAATCACTTGAAGATGCTAATATTCATGCAATTGGACCCATGCTTCCGGATGATGAGGAGGAGCTTTTAGCTGGCATAGCAGATGATTTGGACCTAAGTGGGTTGCCTGGCTCCCTAGAGGACTTGGAAGATTATGATCTTTTTGGTAGTGGTGGAGGTATGGAACTGGAAACTGATCCACAGGAAAGTCTTAATGTGGGTATATCAAAATTAAGTTTCTCTGATAGTTCAATTGGCAATGGTTTTCCCCATTATTCTTTTCCTAATGGTGTCGGAACTGTTGCTGGAGAACATCCATATGGGGAGCATCCTTCACGAACATTATTTGTTCGAAATATTAACAGTAATGTGGAGGATTCAGAGTTGAGAGCCCTTTTTGAGCAATATGGTGATATTAGAACCCTCTATACTGCATGTAAACATCGTGGGTTTGTAATGATATCCTACTATGACATCCGTGCCGCTCGAACAGCTATGCGTGCCTTACAAAACAAACCACTGCGGCGGAGGAAACTCGACATTCACTTCTCAATACCAAAGGATAATCCATCAGACAAGGATATAAATCAAGGAACCTTGGTGGTTTTTAATTTGGATCTGTCTGTTTCAAATGAAGATCTTCGTCAAATATTTGGGGCATATGGCGAGGTCAAAGAGATAAGGGAAACGCCTCACAAGAGGCATCATAAATTTATTGAATATTATGATGTTAGAGCTGCAGAAGCAGCACTTAAATCATTAAACAGGAGTGACATAGCGGGTAAACGCATAAAACTGGAACCTAGTCGTCCTGGTGGAGCTCGTCGAAATTTGATGCTCCAGTTAAATCAAGATCTTGATCAAGATGAATCTCGGAGCTTCCGACATCAAGTGGGTTCACCTGTAGCCAACTCTCCACCAGGTAATTGGTTGCAGTTTAACAGCCCCATCGAGCATAAGCCAATGCAATCTATCAGTAGTTCTCCTGGTTCTAGGATTATGAGCCCAACAACTGGCAACCATTTGCCAGGATTAGCTTCAATCTTACAACCTCAGGTATCTAACACTGTGAAGGGTGCAGCTGTTGGTAAGGACTTAGGAACGAGTAGCCACGGAGAGCACATATTTAGTAGTACCAATTCATCTCATGGAGCTACATTTCAATCGCATTCACTTCCAGAACCAACATACAGTCAATATCACGGAGCTTTGCCCTCTTTTGGTCCATCAACTTCAAATGGATCTTCAGTGGAAACCTTGTCTGGGCCACAGTTTCTTTGGGGAAGTTCAAGCCTATACTCTGAGCAGACCAAATCTTCACCTTGGCCAAGGCCATCTGTGGGGCTTCCTTTTACATCAAATGGAAAGTGCCTTGCTTTCCAATACCCTGGTCAGAATAGTTCCTTTGTTGGTTCATCCCAGCATCATCTTCATCATCATGTTGGTTCTGCTCCATCAGGTGTTCCATTTGAGAGGCGCTTTGGTTTCCTTCCTGAATCACCTGAAACCTCATTCATCAATCATGTTGGTTATGGAGGCATAAATGTGGGACACAATGATGGAAATTACATGGTTAACATGGGCGGATCTGTTAATGCTGGCATTACTATACCAAGGAATATGTCTGAAAATGTTCAATCAAACTTTAGAATGAGATCTTCTCCAAGGCTTAGCCCTGTGTTTTTGGGTAATGGTCCTTACCCCGGCCTGCCACCTTCCACCATGGAGGGTTTGACTGACCGTGGGCGGAGTAGAAGGGTAGAGAACAATGGTAACCATGTTGATAGCAAGAAGCAATTTCTGCTTGACTTGGATAAGATTAAAAGTGGTGAAGATGCAAGGACTACTTTAATGATAAAGAATATCCCAAATAAGTACACCTCAAAAATGTTATTAGCTGCCATTGACGAAAATCACAGGGGTACCTACGATTTTCTCTATCTGCCTATTGATTTCAAGAATAAATGCAATGTGGGCTATGCATTTATCAACATGCTGGCACCCTCTCTTATTATTCCATTCTACGAGACATTCAATGGTAAGAAGTGGGAGAAGTTTAACAGTGAGAAAGTTGCTTCTTTGGCATATGCTCGAATCCAAGGAAAGGCTGCCCTTGTGAGCCACTTCCAAAATTCAAGTTTGATGAATGAAGATAAGCGATGCCGTCCCATTCTCTTCCATTCAGAGGGTCCTGAAGCTGGTGATCAGATCGTACAAGAACATCTTCCCTCCAATCTCAATATCCAGGTTCTTAGATCGAGTGAGTCACATTCATTTGATTTGCCTGGAAGCCCCCCCAAGGATAACCCTTCTGTGAGCTTGGAGACAAGTTAG 2835 0.4272 MLSFSLSIIFCPFSLVLPNHLSALARHHALPYTKDSPLGCHRKVEEIIPIWFWGDRVPSSFRPSLFVFFETLGFADFASSFRKVDAMKQSFDISASGPTKIPSINIPKEVWRSTWDVLPGSDVYHASSDATLFSSSLPVLPHEKLNLNDTENEYQSVDDIPSGFKKLHQDLEVNESLEDANIHAIGPMLPDDEEELLAGIADDLDLSGLPGSLEDLEDYDLFGSGGGMELETDPQESLNVGISKLSFSDSSIGNGFPHYSFPNGVGTVAGEHPYGEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKDNPSDKDINQGTLVVFNLDLSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEYYDVRAAEAALKSLNRSDIAGKRIKLEPSRPGGARRNLMLQLNQDLDQDESRSFRHQVGSPVANSPPGNWLQFNSPIEHKPMQSISSSPGSRIMSPTTGNHLPGLASILQPQVSNTVKGAAVGKDLGTSSHGEHIFSSTNSSHGATFQSHSLPEPTYSQYHGALPSFGPSTSNGSSVETLSGPQFLWGSSSLYSEQTKSSPWPRPSVGLPFTSNGKCLAFQYPGQNSSFVGSSQHHLHHHVGSAPSGVPFERRFGFLPESPETSFINHVGYGGINVGHNDGNYMVNMGGSVNAGITIPRNMSENVQSNFRMRSSPRLSPVFLGNGPYPGLPPSTMEGLTDRGRSRRVENNGNHVDSKKQFLLDLDKIKSGEDARTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMLAPSLIIPFYETFNGKKWEKFNSEKVASLAYARIQGKAALVSHFQNSSLMNEDKRCRPILFHSEGPEAGDQIVQEHLPSNLNIQVLRSSESHSFDLPGSPPKDNPSVSLETS 944
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere02g2336 944 FunFam MEI2-like protein 5 isoform 2 269 363 - -
Dere02g2336 944 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 282 346 IPR000504 GO:0003723
Dere02g2336 944 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 367 432 IPR000504 GO:0003723
Dere02g2336 944 SUPERFAMILY RNA-binding domain, RBD 783 868 IPR035979 GO:0003676
Dere02g2336 944 Gene3D - 364 462 IPR012677 -
Dere02g2336 944 CDD RRM3_MEI2_like 784 869 IPR034454 -
Dere02g2336 944 CDD RRM1_MEI2_like 279 355 IPR034453 -
Dere02g2336 944 Gene3D - 269 363 IPR012677 -
Dere02g2336 944 PANTHER RNA RECOGNITION MOTIF-CONTAINING 128 897 - -
Dere02g2336 944 FunFam Protein MEI2-like 1 364 459 - -
Dere02g2336 944 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 280 353 IPR000504 GO:0003723
Dere02g2336 944 CDD RRM2_MEI2_like 364 434 - -
Dere02g2336 944 SMART rrm1_1 281 349 IPR000504 GO:0003723
Dere02g2336 944 SMART rrm1_1 366 434 IPR000504 GO:0003723
Dere02g2336 944 Pfam RNA recognition motif 2 781 877 IPR007201 -
Dere02g2336 944 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 365 438 IPR000504 GO:0003723
Dere02g2336 944 SUPERFAMILY RNA-binding domain, RBD 277 440 IPR035979 GO:0003676
Dere02g2336 944 MobiDBLite consensus disorder prediction 923 944 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere02g2336 Dere-ChrDere02 23904758 23913386 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere02g2336 275 473 Eukaryotic Initiation Factors Gene Family AT1G71770 25.333 1.23e-06 50.4