Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere02g2316 ATGTATTATCTTGGCCTGTCTCATAACCACTTTATTGGAGCTCTACCAAAAGAGTTGGGTATGTTGGAAATGTTACAGGCCATTGATGTTTTAAACAACAATCTTTTTCGTGTTATTCCTAGGACACTTTCAGGGTGCAAAAATATATTCAATCTTGATCTTTTAGGAAATAATATCTCAGGTCCTATTCCTGTTGAAGCTTTCATTCATATGGACTTGCTTCAAAGCTTGAACCTTTCAAGGAACCATTTAGATGGTGAAATCCCTGAGATATTATCCATGCTTGAGCAACTTATTTCCTTAGATCTTTCTCAGAATAACTTGAAGGGAACTATATCTGAGAACTTCACCATTCTCTCTAACCTTAAGCTTCTCAACCTTTCTTTTAACCAACTTGAAGGTCAAGTTCCCTCAAGTGGAATATTCTCACATATCAATTCATCTGAATTGATGGGAAACCCTGCTCTTTGTGGAACTGAATTCCTTAGGCCATGCAGGGAAACTACAAATAGTTCTCATTCACTATCCAAGAAGAGCATATCCATTATTGCTTCACTTGGATCTGTTGCTATACTTCTACTTCTAGTGTTTCTGATTCTATTTCTCAGACGAGGCGCCAAATTGTGTTGCTCTAACAAGATTGAGAATCCTAAAATACCAAACTACACTCCAGCTTTGACTCTTGAAAGATTTGATAGAAAGGACTTAGAAAATGCTACTGGTTTTTTCAGCTCAGAAAACGTCATTGGAGCTAGCAGTTTGAGCACTGTTTATAAGGGTCAATTGGAAGATGGCAGTACAGTGGCAATAAAAAAACTGAACTTGAACCAGTTTCCTGCAGAATCTGACAAGCTCTTCAAGAAAGAAATAAGCACGTTGAGCCAGCTGAGGCATAGGAATTTGGTTAAGGTACATGGGTATGCTTGGGAGAGTGGGAAGATAAAGGCCTTGGTTCAAGAGTACATGCAGAATGGGAATTTGGAGAGCATAATACATAATGAAGGGATGGATCAGTCTAGGAGGACATTATCTGAAAGGCTCAACGTTCTCATTGCTGTTGCTAGTGGATTGGATTACTTGCACTCTGGTTATGATATTCCCATTGTGCACTGTGATTTGAAGCCTTCTAATATCCTTTTGGATGGAGATTGGGAGGCTCATGTGAGTGATTTTGGAACAGCTAGAATGCTTGGTCTCCATTTGCAGGATGGTGCTTCTCTTTCCTCATCAGCAGTTTTCCAAGGTACTATTGGTTATTTGGCTCCAGAGCATGCCTACATGAGGAAAGTAACGACCAAAGTTGATGTGTTCAGCTTTGGTATAATAGTAATGGAGTTTCTAACAAGAAGGAGACCAACGGGGCTCTCAGAAGAGGATGGTTTGCCAGTAAGTCTGCGTGGAATAGTGCAGAAAGCACTTGCAGGTGGAACAATACAACATCTTCTTGAAGTTGAGGATCCTACGTTGGCATGTCTTGTCTCTGAGAAGCCTCATGAACATGAACAACTGTTGGTGGAGCTCTTGAGATATGGGAATGGTGGAAAAGAGCATTCAATTGGAAGAAGTAGACAGATACAATTCACACATCTCCAGAAGTTCTTCCCAATACACACAAAACCCAACATCAGTATCAAACTCACACTCAGATTCGCTTGCCTTTCTCATTGA 1668 0.4017 MYYLGLSHNHFIGALPKELGMLEMLQAIDVLNNNLFRVIPRTLSGCKNIFNLDLLGNNISGPIPVEAFIHMDLLQSLNLSRNHLDGEIPEILSMLEQLISLDLSQNNLKGTISENFTILSNLKLLNLSFNQLEGQVPSSGIFSHINSSELMGNPALCGTEFLRPCRETTNSSHSLSKKSISIIASLGSVAILLLLVFLILFLRRGAKLCCSNKIENPKIPNYTPALTLERFDRKDLENATGFFSSENVIGASSLSTVYKGQLEDGSTVAIKKLNLNQFPAESDKLFKKEISTLSQLRHRNLVKVHGYAWESGKIKALVQEYMQNGNLESIIHNEGMDQSRRTLSERLNVLIAVASGLDYLHSGYDIPIVHCDLKPSNILLDGDWEAHVSDFGTARMLGLHLQDGASLSSSAVFQGTIGYLAPEHAYMRKVTTKVDVFSFGIIVMEFLTRRRPTGLSEEDGLPVSLRGIVQKALAGGTIQHLLEVEDPTLACLVSEKPHEHEQLLVELLRYGNGGKEHSIGRSRQIQFTHLQKFFPIHTKPNISIKLTLRFACLSH 555
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere02g2316 555 SUPERFAMILY Protein kinase-like (PK-like) 222 458 IPR011009 -
Dere02g2316 555 PRINTS Leucine-rich repeat signature 98 111 - -
Dere02g2316 555 PRINTS Leucine-rich repeat signature 119 132 - -
Dere02g2316 555 ProSiteProfiles Protein kinase domain profile. 243 534 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere02g2316 555 ProSitePatterns Serine/Threonine protein kinases active-site signature. 368 380 IPR008271 GO:0004672|GO:0006468
Dere02g2316 555 Gene3D Phosphorylase Kinase; domain 1 210 321 - -
Dere02g2316 555 FunFam Leucine-rich repeat receptor-like protein kinase 73 167 - -
Dere02g2316 555 PANTHER LEUCINE RICH REPEAT KINASE 2 2 497 - -
Dere02g2316 555 SUPERFAMILY L domain-like 3 160 - -
Dere02g2316 555 Gene3D Transferase(Phosphotransferase) domain 1 322 510 - -
Dere02g2316 555 Gene3D Ribonuclease Inhibitor 1 174 IPR032675 -
Dere02g2316 555 Pfam Protein kinase domain 244 459 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere02g2316 555 FunFam LRR receptor-like serine/threonine-protein kinase FLS2 206 321 - -
Dere02g2316 555 SMART serkin_6 243 503 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere02g2316 Dere-ChrDere02 23687164 23690992 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere02g2316 3 533 Receptor kinase-like Gene Family AT5G46330 52.037 1.51e-161 489
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Dere02g2316 Pkinase 1.1e-39 CL0016