Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere02g2313 ATGGGGTTGAGAAATTTGGGACAATTTGGTGTCTTTCTCAAAGAAGGATGGGATCAAGCATATTTGGTTGGAAAATTCTTCTGTTTTCTTCACGTTACTACTTCTTATCTCGTGGGCTCTGCTATTATCGGTGGTCCGAGCATGCTTCCGACAATCGATTCTACGGCTAACATTGTATTGACTGATAAAATCTCCACCCGGTTTGGTAAAGTTGGGCGCGGAGATATTGTCCTCGTGCGGTCACCCCAAAATCCTCGAATGTGCGTTACCAAGCGCTTGCTTGGATTGGAGGGTGATAGCATCACATTTCTTGTCGATCCTATGAACAGTGATAAATGCGAGACTGTTGTGGTTCCCGTGGGGCACATTTGGGTACAGGGAGATAACATATACAAATCCACTGATTCAAGACAATTTGGTCCTGTTCCTTATGGTCTTCTCTCTGGCAAGGTGTTCTGGAGGCACAGAACCATTTCGGAGGTTCCATTGCTCCCAGAAGCTTCGGTCCTATGTTGGATCTTCCATGACTTTCCTAGGTTGGGATTTCCCATGCCCTCTCTTGTACTTCTTCCTCTTGGAACACAGCTTTCTTTGGTCACAAACGATTCCAGAGGAATTCATTGTCCATCCCAAGTGGATTCATTCCCTTCCACCGAAGCAATTCAACCCCGTAAGCTGAAGAAACTCATGAACTTCCCTAAGACTTCACGCATAGGAGGTTTCTGA 726 0.4573 MGLRNLGQFGVFLKEGWDQAYLVGKFFCFLHVTTSYLVGSAIIGGPSMLPTIDSTANIVLTDKISTRFGKVGRGDIVLVRSPQNPRMCVTKRLLGLEGDSITFLVDPMNSDKCETVVVPVGHIWVQGDNIYKSTDSRQFGPVPYGLLSGKVFWRHRTISEVPLLPEASVLCWIFHDFPRLGFPMPSLVLLPLGTQLSLVTNDSRGIHCPSQVDSFPSTEAIQPRKLKKLMNFPKTSRIGGF 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere02g2313 241 Gene3D Umud Fragment, subunit A 33 162 - -
Dere02g2313 241 FunFam Inner membrane protease subunit 1 34 162 - -
Dere02g2313 241 PANTHER PROTEASE FAMILY S26 MITOCHONDRIAL INNER MEMBRANE PROTEASE-RELATED 11 164 - -
Dere02g2313 241 SUPERFAMILY LexA/Signal peptidase 35 161 IPR036286 -
Dere02g2313 241 Pfam Signal peptidase, peptidase S26 113 153 IPR019533 GO:0004252|GO:0006465
Dere02g2313 241 Pfam Signal peptidase, peptidase S26 27 103 IPR019533 GO:0004252|GO:0006465
Dere02g2313 241 CDD S26_SPase_I 45 151 IPR019533 GO:0004252|GO:0006465
Dere02g2313 241 PRINTS Bacterial leader peptidase 1 (S26A) family signature 89 101 IPR000223 GO:0006508|GO:0008236|GO:0016020
Dere02g2313 241 PRINTS Bacterial leader peptidase 1 (S26A) family signature 118 137 IPR000223 GO:0006508|GO:0008236|GO:0016020
Dere02g2313 241 PRINTS Bacterial leader peptidase 1 (S26A) family signature 36 52 IPR000223 GO:0006508|GO:0008236|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere02g2313 Dere-ChrDere02 23656922 23658823 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere02g2313 48 186 MADS-box Gene Family AT1G29960 45.324 1.36e-38 129