Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere02g2312 ATGGGTCGTCGGAAGATCGACATAGAGATGGTGAAGGACGCAGGGTCGAGGCAAGTAACGTTCTCGAAGCGCCGGAACGGCCTCTTCAAGAAAGCGAACGAGCTAGCGATACTGTGCGGCGCGGTACTTGCCATTGTGGTGTTCTCGCCAGGTGGTAAGCCTTACTCCTTCGGCCACCCTTCCATCGATGCGGTGGCGCACCGGTTTCTGCACCACCACAACCCGCCGGAAGGTTCTTCGAAGGTTGATTCTGGAAGACTGGAGAAGCTCAACAAGCGGCTGGTGAATCTGACGAAGCAGCTTGAGGTGGAGAAGGATAAGGGTGCGATGCTGGACAAGACTCTTGGTGAGAAGAAGCTCGCATGTGGGCTTAGGCTTGGACCTGGATCTGGGTCTGGGCCTGAGAATTTGGGTGAGCTTGAGAGATTGAAGCGATCGCTGGAGGAGCTTAAGGATGATGTGAAGCTGCGCATGAGAGAAATGGAAGTGGCGTCGTCTTTGCTTTTGCCTGTAGAAAACTGA 522 0.546 MGRRKIDIEMVKDAGSRQVTFSKRRNGLFKKANELAILCGAVLAIVVFSPGGKPYSFGHPSIDAVAHRFLHHHNPPEGSSKVDSGRLEKLNKRLVNLTKQLEVEKDKGAMLDKTLGEKKLACGLRLGPGSGSGPENLGELERLKRSLEELKDDVKLRMREMEVASSLLLPVEN 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere02g2312 173 Coils Coil 87 107 - -
Dere02g2312 173 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Dere02g2312 173 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Dere02g2312 173 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Dere02g2312 173 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Dere02g2312 173 SUPERFAMILY SRF-like 1 76 IPR036879 GO:0003677|GO:0046983
Dere02g2312 173 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 12 57 IPR002100 GO:0003677|GO:0046983
Dere02g2312 173 FunFam Agamous-like MADS-box protein AGL62 13 79 - -
Dere02g2312 173 PANTHER MADS BOX PROTEIN 3 155 - -
Dere02g2312 173 Coils Coil 137 164 - -
Dere02g2312 173 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Dere02g2312 173 Gene3D - 14 83 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere02g2312 Dere-ChrDere02 23655609 23656130 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere02g2312 1 108 Type I MADS-box Gene Family AT2G34440 54.464 6.24e-39 129
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Dere02g2312 SRF-TF 1.9e-23 No_clan