Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere02g2244 ATGGCTTATCTCTGCTCCGGCTACGACGCCCGCATCCACGCCGCCAACCGCATCGCCTCCCGCCACGAGCGTGTGTGGGTGTGTGAGGCATGTGAACGCGCCCCCGCTGCGTTTCTCTGCAAGGCCGACGCTGCCTCCCTCTGCTCCGCCTGCGACGCCGACATCCACTCTGCCAACCCACTCGCCAGCCGCCACCACCGAGTCCCCATCCTCCCCATCTACGGCCCTCCTTCTGCCACCCACGTGGGGTCTGCTGCCGACGGGGACGATGGGTTTCTAGCTCACGGAGGCGACGAGGTTGAGGAGGAGGAGGTTGTCCATGAGGAGGATGAAGACGAGGCTGCGTCGTGGTTGTTGCTGAATAACAACAACACCACCAACTCCAACAACAACAACAACAACAATCAGAGTAATGGGTTCTTGTTTGGTTCCGGGGAGGTTGATGAGTATTTGGACCTCATGGATTGCAATTCGTGTGCTGAAAACCAGTTAACTGATCACTACAATCAGCAACAACATTATGGTGTTCCTCACAAGAGCTACGCCGGTGACAGCATCGTTCCGGTTCAGCAGCACCAGCATTTTCAGCTGGGATTGGACTTTGATTCCTCAAAAGCCGGCTACAGTTTCAACGGTTCTGTTGCTCAAAATGTTTCGATTTCGTCAATAGATGTTGGCATTGTACCCGAATCAACTATTAGCGATGTCTCCATTTCCCATTCAAGACCTCCAAAAGGGACAATTGACCTCTTTTCTGGGCCTCCTATTCAGTTACCTTCCCAGCTTACCCCAATGGACAGGGAGGCCAGAGTGCTAAGATACAGGGAGAAGAAGAAGACAAGAAAGTTTGAGAAGACCATAAGGTATGCCTCAAGGAAGGCTTATGCAGAGACCAGACCCCGTATCAAAGGTCGGTTTGCAAAGAGAACAGAGGTAGAAGCTGAAGTAGACCAGATGTTCTCCACATCTCTAATGACAGAAACTGGATATGGCATCGTGCCCTCTTTCTGA 1011 0.5262 MAYLCSGYDARIHAANRIASRHERVWVCEACERAPAAFLCKADAASLCSACDADIHSANPLASRHHRVPILPIYGPPSATHVGSAADGDDGFLAHGGDEVEEEEVVHEEDEDEAASWLLLNNNNTTNSNNNNNNNQSNGFLFGSGEVDEYLDLMDCNSCAENQLTDHYNQQQHYGVPHKSYAGDSIVPVQQHQHFQLGLDFDSSKAGYSFNGSVAQNVSISSIDVGIVPESTISDVSISHSRPPKGTIDLFSGPPIQLPSQLTPMDREARVLRYREKKKTRKFEKTIRYASRKAYAETRPRIKGRFAKRTEVEAEVDQMFSTSLMTETGYGIVPSF 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere02g2244 336 ProSiteProfiles Zinc finger B-box type profile. 23 70 IPR000315 GO:0008270
Dere02g2244 336 SMART bboxneu5 23 70 IPR000315 GO:0008270
Dere02g2244 336 ProSiteProfiles CCT domain profile. 267 309 IPR010402 GO:0005515
Dere02g2244 336 CDD Bbox1_BBX-like 27 70 - -
Dere02g2244 336 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 2 324 IPR045281 GO:0009909
Dere02g2244 336 Pfam CCT motif 267 309 IPR010402 GO:0005515
Dere02g2244 336 Pfam B-box zinc finger 25 70 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere02g2244 Dere-ChrDere02 22956420 22958257 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere02g2244 2 336 C2C2-CO-like Transcription Factor Family AT3G02380 56.034 5.84e-124 358
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Dere02g2244 zf-B_box 3.8e-07 No_clan