Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere02g2233 ATGGCTCACTTTTCTGACTCTCAACTTCCATACCCTTCTTCTCTCGAGGATGAAGTTGAAGAATCAGACCCCGATGAACAGGACTCTGATCTCCTATCACTGTCTCCCAACGATCATTGGTGCACCGACTCCTCCAACCCCTTTGCAACCTTGTCCTTCGACTATCTGAGCAACCATTCAAACTGGTACTCTGATTCGGACTCCGATTCGGCGAGTTGCTTTGTCACAGATCTTTTTGATAATCGCTCCTCTGAGCACTCTTACCGTCGCTGTGATGATGGCTCTGATATTAATCCGTTTTCGGGGGTTCTTTGGGATGGTCACGGGGGAGATGGATCAAGTTATGCGGACGCAGAATTAGGGCCTGGCTTTGGAACGGGAAAAGATGCCGGGAATTCTGCAGTTGCTGAGATATCGGGCTCAGAGAGGGTTCGTTCGCACACGGATGGTCTTCGAATTGTCGGGTTTAGTTCTGATTCGGATTCTAATAGTGATGATGAGCTTGATAGGGCTATAGAATTCAGTTCTGGTGAAAATGATGGCAATAGAATTAGCGGTTTTGATGATTTGGATGTTCGTTTATGTTGGGACAGCCTTTGTTTGGAGGATGAGCGGACCCTCAATGAACATTTTGAATGGGAGGATTTAGAGGAAAGAATCAACGATGGAGAAGACTTGAGCTTGGTGATTGGTGAGGTCGATGATCAATCAGTAGCATCTGGGTTTTCCTATGGAGAAGAGCCGGGTGAAGAGGCACTGAGATACCTTGAATGGGAAATTCTGTTAGCGATCAACAATTTGGAGAGGAATTCAAGTTTGGAACGTGATGCTACTGCAGGTTCATTTTTAACGGTGCAGGATGATGGTTATATGTACACAGCTGAATATGATATATTTTTTGGGCATTTCCTGGAAAATGAGAGTTCCTTAAAGGTTAGTCCTCCCACAGCGAAAAGTGTTATGGATAATCTTCCTCTGGTAGAATTAACAAAGGAGGACTTTCAGGGGGAGAATGTAGTTTGTGCTGTTTGCAAAGATGAAATCCAATGGAAGGAGAAGGTGAGAAGGCTTCCCTGCTCACACTTTTACCATGGGGACTGCATTCTGCCATGGTTGAGCATTCGTAATACGTGCCCTGTTTGTCGGTTTGAGTTGCCCACAGATGATCCTGATTATGAGCAGAGGAAGAATCCGAGAACTGCTCATGATCTGTTGGAGTATGCAGTGCAGATGCAAACATGA 1242 0.4541 MAHFSDSQLPYPSSLEDEVEESDPDEQDSDLLSLSPNDHWCTDSSNPFATLSFDYLSNHSNWYSDSDSDSASCFVTDLFDNRSSEHSYRRCDDGSDINPFSGVLWDGHGGDGSSYADAELGPGFGTGKDAGNSAVAEISGSERVRSHTDGLRIVGFSSDSDSNSDDELDRAIEFSSGENDGNRISGFDDLDVRLCWDSLCLEDERTLNEHFEWEDLEERINDGEDLSLVIGEVDDQSVASGFSYGEEPGEEALRYLEWEILLAINNLERNSSLERDATAGSFLTVQDDGYMYTAEYDIFFGHFLENESSLKVSPPTAKSVMDNLPLVELTKEDFQGENVVCAVCKDEIQWKEKVRRLPCSHFYHGDCILPWLSIRNTCPVCRFELPTDDPDYEQRKNPRTAHDLLEYAVQMQT 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere02g2233 413 MobiDBLite consensus disorder prediction 1 36 - -
Dere02g2233 413 ProSiteProfiles Zinc finger RING-type profile. 341 382 IPR001841 -
Dere02g2233 413 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 208 386 - -
Dere02g2233 413 FunFam E3 ubiquitin-protein ligase RING1-like 302 388 - -
Dere02g2233 413 Pfam Ring finger domain 341 382 IPR001841 -
Dere02g2233 413 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 301 388 IPR013083 -
Dere02g2233 413 SUPERFAMILY RING/U-box 321 389 - -
Dere02g2233 413 SMART ring_2 341 381 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere02g2233 Dere-ChrDere02 22884622 22885863 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere02g2233 146 397 C3H Transcription Factor Family AT3G02340 38.662 7.75e-43 153