Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Dere02g2202 | ATGGGTTCTGTTTGTTGTTGTTTGAGTGCTGATGAACTTGAAGATTATGTAAATCCAAATAGTTCTGTATATAGGAATTGCGAGTGTCTCAGTTGCTTCGTACAGAACTTTTACAATGTGTATACATCAATTTTCCGTAGAGGGGAAGTGCATTCGCTTCCTTCTTCTATACAGGGGGCAGCATCTATGACTTCTACAGCATCACTTGATAATTCGCTATCTGACATGTACCGTTCGCCTCCAAGGCCATTGCCTTATGATGTTGATCCTAGGCATTTCCGCTCACAGCGTGATGTATTCATTTCAAGAAATGAGAAAGGTTCAAGTCATTTGAATGAGGAATCAGAACCTCTAAGGAGTGATGTAGATGTGGATCGAGAATCTTTAAATTCAGGAGGTAAATGGAATGGATCTGCCCGTGAAGATGGATCAATGGAATACCGGTCCAAGTCCTCAGTAAGATTCTCATCTGCAAAATATACAACTGGAGTTGGGCTAGTTTATTCATCATCAGAAGAGGAGGATGTTTGCCCAACTTGTCTTGAAGAATATACTCAAGAGAACCCAAGGATATTGACGAAGTGCTCTCATCATTTTCATCTTGGTTGCATTTATGAGTGGATGGAGAGAAGTGAAAACTGTCCAGTATGTGGGAAGGTAATTATTTCTCTTGATATTTCCTGTATTCTTTCTGACTGA | 699 | 0.4006 | MGSVCCCLSADELEDYVNPNSSVYRNCECLSCFVQNFYNVYTSIFRRGEVHSLPSSIQGAASMTSTASLDNSLSDMYRSPPRPLPYDVDPRHFRSQRDVFISRNEKGSSHLNEESEPLRSDVDVDRESLNSGGKWNGSAREDGSMEYRSKSSVRFSSAKYTTGVGLVYSSSEEEDVCPTCLEEYTQENPRILTKCSHHFHLGCIYEWMERSENCPVCGKVIISLDISCILSD | 232 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Dere02g2202 | 232 | CDD | RING-H2_AIRP1-like | 173 | 221 | - | - | |
| Dere02g2202 | 232 | MobiDBLite | consensus disorder prediction | 104 | 128 | - | - | |
| Dere02g2202 | 232 | MobiDBLite | consensus disorder prediction | 104 | 143 | - | - | |
| Dere02g2202 | 232 | Pfam | RING-H2 zinc finger domain | 172 | 217 | IPR024766 | GO:0008270 | |
| Dere02g2202 | 232 | SUPERFAMILY | RING/U-box | 172 | 223 | - | - | |
| Dere02g2202 | 232 | SMART | ring_2 | 177 | 217 | IPR001841 | - | |
| Dere02g2202 | 232 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 154 | 224 | IPR013083 | - | |
| Dere02g2202 | 232 | FunFam | E3 ubiquitin-protein ligase At3g02290-like | 154 | 223 | - | - | |
| Dere02g2202 | 232 | PANTHER | ZINC FINGER, RING/FYVE/PHD-TYPE | 60 | 221 | - | - | |
| Dere02g2202 | 232 | ProSiteProfiles | Zinc finger RING-type profile. | 177 | 217 | IPR001841 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Dere02g2202 | Dere-ChrDere02 | 22599930 | 22601985 | Dispersed/Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Dere02g2202 | 1 | 221 | C3H Transcription Factor Family | AT5G38895 | 56.306 | 7.78e-92 | 271 |