Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere02g2198 ATGGGGAGAGGTAAGATTCAGCTGAAGCGGATCGAGAACAAAGCGAGCAGACAAGTGACGTTCTCAAAGCGCAGAACGGGACTGCTCAAGAAAGCAAATGAAATCTCTGTGCTTTGTGATGCTGAAGTCGCTTTGATCGTCTTCAATTGCAAAGGCAAACTCACTGAGTTTTCCTCTCCATCCTCCAGGTTCCTTCTTCTGATCTTATCTGTGTTTGGAGATTCCATGTTCTACTTACTGTTATTGCTTTGTGTATTCCTTCCTGATACAGTGCCGGCGATATCACAATATGATGCTAAACTGAATTAG 309 0.4369 MGRGKIQLKRIENKASRQVTFSKRRTGLLKKANEISVLCDAEVALIVFNCKGKLTEFSSPSSRFLLLILSVFGDSMFYLLLLLCVFLPDTVPAISQYDAKLN 102
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere02g2198 102 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Dere02g2198 102 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Dere02g2198 102 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Dere02g2198 102 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Dere02g2198 102 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 68 - -
Dere02g2198 102 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Dere02g2198 102 SUPERFAMILY SRF-like 2 62 IPR036879 GO:0003677|GO:0046983
Dere02g2198 102 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Dere02g2198 102 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Dere02g2198 102 Gene3D - 13 68 IPR036879 GO:0003677|GO:0046983
Dere02g2198 102 CDD MADS_MEF2_like 2 66 IPR033896 GO:0000977|GO:0045944
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere02g2198 Dere-ChrDere02 22569899 22570207 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere02g2198 1 61 MADS-box Gene Family AT1G26310 80.328 6.71e-29 102
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Dere02g2198 SRF-TF 2e-25 No_clan