Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere02g2197 ATGAACACCAACCCCCAAGCTCCACTCTATTTCCTGGTGGAGATTGGAAAACCTGAGAGGATAAAAAGCCAGAAAAGAGGATCAACTGGTACCCAAGAGGAGGAGCAGGAAGGTGAGAGGAAGAAAACAAGAAAAGATATGGGGAGGGGAAGAGTGGAGCTCAAGAGGATAGAGAACAAGATAAACAGGCAGGTCACATTTGCGAAGAGGAGAAATGGGCTTCTCAAGAAAGCCTATGAGCTCTCTGTTCTCTGTGATGCTGAGGTTGCCCTCATCATCTTCTCCAACCGTGGCAAGCTCTATGAGTTCTGTAGCAGCAATAGCATGCTCAAAACACTCGAAAGGTACCAAAAGTGCAGCTATGGTGCAGTGGAAGTCAGCAAGCCTGCCAAAGAGCTCGAGAATAGCTACCGTGAGTACTTGAAGCTGAAAGCCAGATTTGAATCTCTCCAAAGGACTCAGAGAAACCTTCTAGGGGAGGACTTGGGCCCACTAAGTACCAAAGAACTCGAGCAGCTTGAGCGACAACTGGACTCATCTCTCAAGCAAGTGAGGTCCACAAAGACCCAATTCATGCTGGACCAGCTATCTGATCTTCAAAATAAGGAGCAAATGTTGGCAGAAGCAAACAGATCTCTGACCATGAAGCTGGAAGAAATTAATGCAAGAAACCACTTTAGGCAATCATGGGAAGCTGGTGATCAAAGCATGCAATTTGGTTCACACAATGCTCACTCGCAGGGCTTCTTTCAGCCTCTGGAATGCAATCCCACATTGCAGATGGGTCCTGAATACAGGTATAATCCTATAGCTTCAGATCAGATAGCTGTAACAACTCAAGCCCAACAGGTGAACGGCTTCATACCAGGATGGATGCTCTGA 882 0.4683 MNTNPQAPLYFLVEIGKPERIKSQKRGSTGTQEEEQEGERKKTRKDMGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSNSMLKTLERYQKCSYGAVEVSKPAKELENSYREYLKLKARFESLQRTQRNLLGEDLGPLSTKELEQLERQLDSSLKQVRSTKTQFMLDQLSDLQNKEQMLAEANRSLTMKLEEINARNHFRQSWEAGDQSMQFGSHNAHSQGFFQPLECNPTLQMGPEYRYNPIASDQIAVTTQAQQVNGFIPGWML 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere02g2197 293 SMART madsneu2 47 106 IPR002100 GO:0003677|GO:0046983
Dere02g2197 293 Coils Coil 130 153 - -
Dere02g2197 293 Coils Coil 170 190 - -
Dere02g2197 293 FunFam MADS-box transcription factor 1 59 133 - -
Dere02g2197 293 Pfam K-box region 131 217 IPR002487 GO:0003700|GO:0005634|GO:0006355
Dere02g2197 293 PRINTS MADS domain signature 84 105 IPR002100 GO:0003677|GO:0046983
Dere02g2197 293 PRINTS MADS domain signature 49 69 IPR002100 GO:0003677|GO:0046983
Dere02g2197 293 PRINTS MADS domain signature 69 84 IPR002100 GO:0003677|GO:0046983
Dere02g2197 293 SUPERFAMILY SRF-like 48 123 IPR036879 GO:0003677|GO:0046983
Dere02g2197 293 Coils Coil 199 219 - -
Dere02g2197 293 ProSiteProfiles K-box domain profile. 133 223 IPR002487 GO:0003700|GO:0005634|GO:0006355
Dere02g2197 293 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 56 103 IPR002100 GO:0003677|GO:0046983
Dere02g2197 293 ProSiteProfiles MADS-box domain profile. 47 107 IPR002100 GO:0003677|GO:0046983
Dere02g2197 293 Gene3D - 59 129 IPR036879 GO:0003677|GO:0046983
Dere02g2197 293 PANTHER SERUM RESPONSE FACTOR HOMOLOG 49 228 - -
Dere02g2197 293 ProSitePatterns MADS-box domain signature. 49 103 IPR002100 GO:0003677|GO:0046983
Dere02g2197 293 MobiDBLite consensus disorder prediction 18 50 - -
Dere02g2197 293 CDD MADS_MEF2_like 48 122 IPR033896 GO:0000977|GO:0045944
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere02g2197 Dere-ChrDere02 22548344 22554710 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere02g2197 47 293 MADS-box Gene Family AT5G15800 74.809 1.35e-128 365
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Dere02g2197 K-box 2.9e-28 No_clan