LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Dere02g2196	ATGGTAGTTATAACGATGGGTTCAGAGAAAGTGTGGAAGAAAGGGCCTTGGACTCTTGAAGAGGATAAGTTGCTTAGTGAATATGTGAGCTTGCATGGGGAAGGGAGGTGGAGTTCTGTGTCCAAGTTTACAGGGTTAAATAGGAGTGGGAAAAGTTGCAGGTTGAGATGGGTGAACTATTTGAAGCCAGGGTTGAAGAAAGGCGAATTAACGCCTCAAGAAGAAGCCGTCATCTTTGAACTCCATTCTCTGCTGGGTAACAAGTGGTCTACAATAGCAAAATATTTGCCTGGTAGAACAGACAATGAGATCAAGAACTACTGGAGAACCCACTTCAAGAAGAAGGACAAATCCTCTCGTAATAATAAGAAGCAAGAAAAGAGAAGAGCGAAGATTCTAAAACAGATGAAACAACAAGAACAGCAACAACAACAACAACCTCAACAAGACGATGAGAAAAGCATCGTCTCGTCGCATGCGGAGTCAAACAATCAAACCAACCTGTCTGATACTGTTCTACAAGACAACCACCGCCCAATTACCCCCATGGAAGAAGACCAATACAATTACTTGCCTTTCATGAATCAAGAGTGCTTTCCAACATTATGGCCATCAGAAAGTACAGCAGAAGAAGATGAAGGCATATGGGTTAACTTGTGGAACCTTGACGAAACACAAGGTCATGGAGATCATGTAGACCAGTTCAGCAAGTACGCCATGCAAAACCAAGATACAACTTCTTGTTTCGATGATCTATCCGATGACCTATGCTTTGCAAAAATTCAGCCGGACAAGAATATGGATAACATTACCGCGAGTGAACTAGCAGGTTTTGGAGTGGGTACTCTGCTCCTTTGTGCCACCATCGCGGCCCCCAAAATCGATGCATTCTTCTCTGCCTCTCAGCGCAGCTCATTGGGTCTGTGCAAACGATGTGGCAATCTGAGGAGAATAGCGTGCACTAGATGCAAAGGAACAGGATCAATCAGGGAAGGGGGAACATTTGGTATTAGCCTTGTAGAGGATTTGTATGAAACCCTTGGGAATAAATCATCGGGGAAGCAGATAGCATGCATTAAATGTCAAGCCAGAGGTTACTTTTCATGTCCTGATTGTTCCAGACCATAA	1128	0.4379	MVVITMGSEKVWKKGPWTLEEDKLLSEYVSLHGEGRWSSVSKFTGLNRSGKSCRLRWVNYLKPGLKKGELTPQEEAVIFELHSLLGNKWSTIAKYLPGRTDNEIKNYWRTHFKKKDKSSRNNKKQEKRRAKILKQMKQQEQQQQQQPQQDDEKSIVSSHAESNNQTNLSDTVLQDNHRPITPMEEDQYNYLPFMNQECFPTLWPSESTAEEDEGIWVNLWNLDETQGHGDHVDQFSKYAMQNQDTTSCFDDLSDDLCFAKIQPDKNMDNITASELAGFGVGTLLLCATIAAPKIDAFFSASQRSSLGLCKRCGNLRRIACTRCKGTGSIREGGTFGISLVEDLYETLGNKSSGKQIACIKCQARGYFSCPDCSRP	375

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Dere02g2196	375	ProSiteProfiles	Myb-like domain profile.	62	112	IPR001005	-
	Dere02g2196	375	SMART	sant	13	63	IPR001005	-
	Dere02g2196	375	SMART	sant	66	114	IPR001005	-
	Dere02g2196	375	Gene3D	-	70	115	-	-
	Dere02g2196	375	MobiDBLite	consensus disorder prediction	111	131	-	-
	Dere02g2196	375	CDD	SANT	16	61	IPR001005	-
	Dere02g2196	375	FunFam	Myb transcription factor	14	66	-	-
	Dere02g2196	375	Coils	Coil	122	143	-	-
	Dere02g2196	375	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	13	61	IPR017930	-
	Dere02g2196	375	Gene3D	-	13	66	-	-
	Dere02g2196	375	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	62	116	IPR017930	-
	Dere02g2196	375	MobiDBLite	consensus disorder prediction	110	175	-	-
	Dere02g2196	375	CDD	SANT	71	112	IPR001005	-
	Dere02g2196	375	PANTHER	TRANSCRIPTION FACTOR MYB33-RELATED	11	197	-	-
	Dere02g2196	375	ProSiteProfiles	Myb-like domain profile.	13	61	IPR001005	-
	Dere02g2196	375	MobiDBLite	consensus disorder prediction	136	175	-	-
	Dere02g2196	375	Pfam	Myb-like DNA-binding domain	14	61	IPR001005	-
	Dere02g2196	375	Pfam	Myb-like DNA-binding domain	68	111	IPR001005	-
	Dere02g2196	375	SUPERFAMILY	Homeodomain-like	13	108	IPR009057	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Dere02g2196	Dere-ChrDere02	22536882	22541443	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Dere02g2196	13	228	MYB Transcription Factor Family	AT3G30210	52.511	1.98e-69	218

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MYB	Dere02g2196		Myb_DNA-binding	9e-17	CL0123