Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere02g2171 ATGTTTCCTCCTTCTACATCACTGATCAAATGGCGTTTTTTTCACAAGCCTCTGTCCCCTCTGCTTGTTCTGATATTCTACTTTCTCTTATCGGTCCTCTTAACGTCTTGGGGTGACGCCGTTCCTGCCGATTCAGACAAATCAGTGCTTCTTCAGTTCAAGAATTCAGTCTCCGATCCATCAGGGCTGCTTTCGACCTGGAATTCGGCCGGTGATTCCAATCACTGTTCTTGGTTCGGTGTCTTCTGCGACTCGAATTCACGGGTTGTCTCACTCAACGTTACTGGAAATGGTGGTGGAGGTAAGCGAAGTTCTTTTCCGTGTTCTAATTCTGCTGAATTCCCACTTTATGGGTTTGGAATTAGGAGGAGCTGTAACGGTAGTAAAGGAGCATTGTTTGGGAAGGTTTCGCCTTTGATCAGTAAGTTTACTGAGCTCAGGATTCTGTCACTTCCGTTCAACGGTTTTGAGGGTGAAATTCCTAACGAAATCTGGGGTATGGGCAAGTTAGAGGTTCTTGACCTAGAGGGCAACTCCATAACTGGGTCTCTTCCTTCTCACTTTGATGGCTTGAGGAACTTGCGCGTTCTTAATCTCGGGTTTAATAGAATTGTAGGGGAGATACCAAGCTCACTCGCACGTCTTGGAAGTTTGGAAGTTTTGAATTTAGCTGCGAATGGCTTAAATGGATCTGTTCCTGGGTTCATTGGTAAGCTGAAAGGGGCATATCTATTGTCTAATCTACTAAGTGGACCTATACCCCTTGAGATCGGGGAGAATTGTGAGAAGCTCGAGCATCTGGATTTGTCGGGTAATTTCTTAGTTCAGCGAATTCCAAGCAGTTTGGGAAACTGCAGTCAGTTACAGACACTTCTGCTGTATTCAAATTTGTTAGAAGAGGTTATTCCGGATGAACTTGGTAAACTTAAGAAGCTTGAAGTGTTGGATGTTTCTAGAAATGCTCTCAGTGGTCCAGTACCTCCGGAGATTGGGAAATGTTCGGAGTTGTCTGTCCTTGTGCTATCAAATCTTTTCAATCCACTTCCAGAAGTCAACAATACCGCTAGGGACTCTTCACAGTTGGTTTCCATAAATGATGAATTGAATTATTTTGAAGGTGCCATGCCTGTAGAAATTACAGCCCTTCCAAAGCTGAGAATATTATGGGCACCAAGGGCAACTCTGGAAGGCAGTTTTCCAAGCAGTTGGGGTGCTTGTGATAACTTAGAGATGGTCAATTTGGCTCAGAATTATTTCACTGGGGAATTTCCTAATCATCTTAGTGGCTGCAAGAAGCTTCATTTTCTTGATTTAAGCTCCAACAACCTTACCGGGGAGCTTGCTGAAGAACTTCATGTTCCTTGTATGACTGTGTTTGATGTTAGTGGGAATATCTTGTCTGGTTCAATTCCTGAATTCTTTAATGGTACTTGTCCCTCAGTTCCTTCCCGGAATGGCAATCTGTTTGATGACAATGTGTCAATTCCATATATGTCTTTTTTCTCATCTAAAGTTCATGATGGATCCCTTTTGTCATCGTTGGGAGAAGTTGATCTTTCAGTTTTTCATAACTTTGGGCACAACAATTTCACTGGTATGCAGTCATTGCCAGTAGCACATGACAGACTGGGAAAGAATATTGTTTATGCGTTTCTTGTCGGAGAAAATGAGCTTACAGGGCCATTTCCTACCAGTTTATTTGACAAGTGTGATGGATTAGATGCGTTGCTCTTAAATGTCAGTTATAATAGGTTATCTGGCCAGATCCCTGCCATGTTTGGTGAAATGTGCAGGTCATTAAAATTTTTGGATGCATCCGGTAACCAGATTACTGGTTCAATTCCTGTTGGTTTAGGGGATTTTGTATCTCTTGTTGCACTGAACCTCAGTTGGAATCAGTTACGAGGTCCGATTCCCATCAGCCTTGGCCAGATGATAAATCTGGCGTTTCTTTCCTTGGCCAGTAATAACTTAAGTGGCTCCATTCCTACTAGCCTGGGGCAGTTGTACTCTTTAGAAGTCTTGGATCTTTCTTCAAACTCTCTTACGGGTGAGATTCCAAAAGGTTTTGAGAACTTGAGAAATCTGACTGGTCTTCTGCTCAATAACAACAAACTTTCTGGACATATTCCTACTGGTTTGGCAAATGTCACTACACTCTCAGCATTTAATGTGTCCTTCAATAACTTGTCTGGATCCTTGCCATCTAATAGTAACTTGATGAAATGCAACAGTGCTGTTGGGAATCCATTTTTACGTTCTTGCCATGCGCTATCTTTGACTACGCCATCAGCAGATCAACAAGGGCAGGTAGATAGTTCTAATTCAGATACTGCTGCACCACCAGAAGCTACTGGCAAGGGGAGCGGGGCTAGTTTCAATTCTATTGAAATAGCATCTATAACATCTGCATCAGCTATTGTTTCTGTTCTCATAGCACTAATTGTTCTGTTCTTCTATACCCGCAAGTGGAACTCCAGGTCCAGGGTTGTTGGCTCTACGAGAAAAGAAGTTATAGTTTTTACTGATATTGGGGTTCCATTGACTTTTGAAACTGTTGTTCGTGCCACTGGAAATTTCAATGCAAGCAACTGCATTGGAAATGGAGGATTTGGGGCTACCTATAAGGCAGAGATAGCACCAGGAAATTTAGTGGCTATAAAACGTTTGTCAGTTGGACGATTCCAAGGTGTTCAACAATTTGATGCAGAGATTAAGACCCTTGGAAGGCTTCGTCATCCAAATCTTGTCACTTTGTTTGGTTACCATGCCAGTGAGACAGAGATGTTTCTTATATACAATTATTTGCCTGGTGGGAACCTGGAAAAGTTTATTCAGGAGAGGTCAACAAGGGCCGTGGACTGGAGAATTCTTCACAAGATTGCACTGGACATAGCCCGGGCACTTGCCTACTTACATGATCAGTGCGTACCACGTGTGCTTCATCGCGATGTCAAGCCCAGCAACATCCTGTTGGATGATGATTTCAATGCATATTTGTCTGACTTTGGATTGGCCAGACTTCTTGGAACTTCAGAAACCCATGCTACTACTGGTGTGGCAGGGACATTTGGTTATGTTGCTCCTGAATATGCTATGACTTGTCGGGTTTCAGACAAGGCCGACGTGTATAGCTACGGTGTTGTGCTTCTGGAGTTGCTCTCAGACAAGAAGGCATTGGATCCTTCATTTTCTTCCTATGGAAATGGCTTCAACATAGTAGCATGGGCGTGCCTGCTACTTAGGCAAGGGCGAGCAAAGGAGTTCTTCACAGCTGGCTTATGGGATGCAGGACCCTCCGATGATTTGGTTGAGGTCTTACACTTAGCCATTATGTGTACGGTTGATTCCCTCTCTACAAGACCTTCAATGAACAAGGTTGTACGAAGGCTTAAGCAACTTCAACCGCCATCATGCTAG 3420 0.4339 MFPPSTSLIKWRFFHKPLSPLLVLIFYFLLSVLLTSWGDAVPADSDKSVLLQFKNSVSDPSGLLSTWNSAGDSNHCSWFGVFCDSNSRVVSLNVTGNGGGGKRSSFPCSNSAEFPLYGFGIRRSCNGSKGALFGKVSPLISKFTELRILSLPFNGFEGEIPNEIWGMGKLEVLDLEGNSITGSLPSHFDGLRNLRVLNLGFNRIVGEIPSSLARLGSLEVLNLAANGLNGSVPGFIGKLKGAYLLSNLLSGPIPLEIGENCEKLEHLDLSGNFLVQRIPSSLGNCSQLQTLLLYSNLLEEVIPDELGKLKKLEVLDVSRNALSGPVPPEIGKCSELSVLVLSNLFNPLPEVNNTARDSSQLVSINDELNYFEGAMPVEITALPKLRILWAPRATLEGSFPSSWGACDNLEMVNLAQNYFTGEFPNHLSGCKKLHFLDLSSNNLTGELAEELHVPCMTVFDVSGNILSGSIPEFFNGTCPSVPSRNGNLFDDNVSIPYMSFFSSKVHDGSLLSSLGEVDLSVFHNFGHNNFTGMQSLPVAHDRLGKNIVYAFLVGENELTGPFPTSLFDKCDGLDALLLNVSYNRLSGQIPAMFGEMCRSLKFLDASGNQITGSIPVGLGDFVSLVALNLSWNQLRGPIPISLGQMINLAFLSLASNNLSGSIPTSLGQLYSLEVLDLSSNSLTGEIPKGFENLRNLTGLLLNNNKLSGHIPTGLANVTTLSAFNVSFNNLSGSLPSNSNLMKCNSAVGNPFLRSCHALSLTTPSADQQGQVDSSNSDTAAPPEATGKGSGASFNSIEIASITSASAIVSVLIALIVLFFYTRKWNSRSRVVGSTRKEVIVFTDIGVPLTFETVVRATGNFNASNCIGNGGFGATYKAEIAPGNLVAIKRLSVGRFQGVQQFDAEIKTLGRLRHPNLVTLFGYHASETEMFLIYNYLPGGNLEKFIQERSTRAVDWRILHKIALDIARALAYLHDQCVPRVLHRDVKPSNILLDDDFNAYLSDFGLARLLGTSETHATTGVAGTFGYVAPEYAMTCRVSDKADVYSYGVVLLELLSDKKALDPSFSSYGNGFNIVAWACLLLRQGRAKEFFTAGLWDAGPSDDLVEVLHLAIMCTVDSLSTRPSMNKVVRRLKQLQPPSC 1139
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere02g2171 1139 SMART serkin_6 860 1138 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere02g2171 1139 ProSiteProfiles Protein kinase domain profile. 860 1134 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere02g2171 1139 ProSitePatterns Serine/Threonine protein kinases active-site signature. 980 992 IPR008271 GO:0004672|GO:0006468
Dere02g2171 1139 FunFam LRR receptor-like serine/threonine-protein kinase RPK2 360 536 - -
Dere02g2171 1139 Pfam Leucine rich repeat N-terminal domain 43 84 IPR013210 -
Dere02g2171 1139 FunFam LRR receptor-like serine/threonine-protein kinase RPK2 258 349 - -
Dere02g2171 1139 PRINTS Leucine-rich repeat signature 669 682 - -
Dere02g2171 1139 PRINTS Leucine-rich repeat signature 433 446 - -
Dere02g2171 1139 SUPERFAMILY L domain-like 44 344 - -
Dere02g2171 1139 FunFam LRR receptor-like serine/threonine-protein kinase RPK2 824 935 - -
Dere02g2171 1139 SUPERFAMILY L domain-like 357 476 - -
Dere02g2171 1139 SUPERFAMILY Protein kinase-like (PK-like) 842 1131 IPR011009 -
Dere02g2171 1139 ProSitePatterns Protein kinases ATP-binding region signature. 866 888 IPR017441 GO:0005524
Dere02g2171 1139 CDD STKc_IRAK 866 1134 - -
Dere02g2171 1139 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 360 1133 - -
Dere02g2171 1139 FunFam Leucine-rich repeat receptor protein kinase EMS1 664 748 - -
Dere02g2171 1139 Pfam Leucine rich repeat 647 706 IPR001611 GO:0005515
Dere02g2171 1139 Pfam Leucine rich repeat 263 322 IPR001611 GO:0005515
Dere02g2171 1139 Pfam Leucine rich repeat 169 228 IPR001611 GO:0005515
Dere02g2171 1139 Gene3D Phosphorylase Kinase; domain 1 821 935 - -
Dere02g2171 1139 SMART LRR_typ_2 621 645 IPR003591 -
Dere02g2171 1139 SMART LRR_typ_2 167 190 IPR003591 -
Dere02g2171 1139 SMART LRR_typ_2 309 333 IPR003591 -
Dere02g2171 1139 SMART LRR_typ_2 669 692 IPR003591 -
Dere02g2171 1139 SMART LRR_typ_2 261 285 IPR003591 -
Dere02g2171 1139 SMART LRR_typ_2 693 716 IPR003591 -
Dere02g2171 1139 SMART LRR_typ_2 191 215 IPR003591 -
Dere02g2171 1139 Gene3D Transferase(Phosphotransferase) domain 1 936 1136 - -
Dere02g2171 1139 FunFam Leucine-rich repeat receptor protein kinase EMS1 570 663 - -
Dere02g2171 1139 Gene3D Ribonuclease Inhibitor 42 243 IPR032675 -
Dere02g2171 1139 FunFam LRR receptor-like serine/threonine-protein kinase RPK2 936 1138 - -
Dere02g2171 1139 Gene3D Ribonuclease Inhibitor 349 546 IPR032675 -
Dere02g2171 1139 Gene3D Ribonuclease Inhibitor 244 348 IPR032675 -
Dere02g2171 1139 Gene3D Ribonuclease Inhibitor 547 763 IPR032675 -
Dere02g2171 1139 Pfam Leucine Rich repeat 430 446 IPR001611 GO:0005515
Dere02g2171 1139 MobiDBLite consensus disorder prediction 765 789 - -
Dere02g2171 1139 SUPERFAMILY L domain-like 524 757 - -
Dere02g2171 1139 Pfam Protein kinase domain 863 1060 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere02g2171 Dere-ChrDere02 22318030 22321449 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere02g2171 40 1139 Receptor kinase-like Gene Family AT3G02130 66.371 0.0 1405
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XV Dere02g2171 Pkinase 4e-43 CL0016