Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere02g2166 ATGGCATTCATCAACAAGATTGGAAAGCTTCTCAAGCATTCTGCTGTCAAGTACATCAATCCAGAATTTTCTGCATCTACTCCATCAATTTACCAGGCAATCAGGTCCATGTCATCTGCAAAGCTTTTTATTGGAGGTGTTTCATATAGCACAGATGATATGAGTCTGAGAGAAGCCTTTGCTCGATATGGAGAGATACTTGACGCAAGGATAATTATGGATCGCGAGACAGGTAGGTCTAGAGGTTTTGGCTTCATAACTTTTGCATCAAGTGAGGAGGCATCTGCTGCTATTCAGGCAATGGATGGCCAGGATCTTCATGGTCGGAGGATACGGGTAAATTATGCTACGGAAAGGTCACGTCCAGGCTTTGGTGGTGGCGGCTATGCGAGAAATGACTATGGAGGTGATGGTAATTATAGCAATACTAGTTATGGAAGCAGGGGTGATGGTTTCAGGGGCAGTGGAAATTATGGTGTTCCAGATGGTAATTATAGCAATACTAGTTATGGAAGCAGCAGTGATGGTTTCAAGGGCAGTGGAAATTTTGGTTTTCCTGATGGTGCTGGTGGCAGTAAATACCAATTCAACCAAAACTCAGGTGGTGATCTTGGCTTTGCTGGCAGTGAACTCAGTAGCAATTCGGGTTTGGGAGATGATGATGGCCAATTTGGTAGCAACCAAAATGAAGGAACGGGCATAGATGATGAAGACAATTTGAGAGAGGACAATGCTGAAGACAATTTAAGAGAGACCCGGCAGTGA 765 0.4405 MAFINKIGKLLKHSAVKYINPEFSASTPSIYQAIRSMSSAKLFIGGVSYSTDDMSLREAFARYGEILDARIIMDRETGRSRGFGFITFASSEEASAAIQAMDGQDLHGRRIRVNYATERSRPGFGGGGYARNDYGGDGNYSNTSYGSRGDGFRGSGNYGVPDGNYSNTSYGSSSDGFKGSGNFGFPDGAGGSKYQFNQNSGGDLGFAGSELSSNSGLGDDDGQFGSNQNEGTGIDDEDNLREDNAEDNLRETRQ 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere02g2166 254 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 36 201 - -
Dere02g2166 254 SUPERFAMILY RNA-binding domain, RBD 24 147 IPR035979 GO:0003676
Dere02g2166 254 Gene3D - 29 203 IPR012677 -
Dere02g2166 254 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 42 112 IPR000504 GO:0003723
Dere02g2166 254 FunFam Glycine-rich RNA-binding protein 3, mitochondrial 12 165 - -
Dere02g2166 254 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 40 118 IPR000504 GO:0003723
Dere02g2166 254 MobiDBLite consensus disorder prediction 204 254 - -
Dere02g2166 254 SMART rrm1_1 41 114 IPR000504 GO:0003723
Dere02g2166 254 MobiDBLite consensus disorder prediction 204 233 - -
Dere02g2166 254 CDD RRM2_NsCP33_like 41 116 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere02g2166 Dere-ChrDere02 22263572 22265525 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere02g2166 33 126 C2H2 Transcription Factor Family AT2G19380 31.915 3.04e-11 61.2