Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere02g2153 ATGGCTAATGCGAGAACCGTCAAGGACGTTTCACCCCACGAATTTGTCAAGGCTTACTCCGCTCACCTCAAGCGCTCTGGCAAGATGGAGCTTCCTGAGTGGACAGATATTGTAAAAACTGCAAGATTTAAAGAACTGGCCCCATATGATCCTGACTGGTATTATGTTAGAGCTGCATCCATGGCAAGAAAGATCTACTTGAGAGGTGGTCTTGGTGTTGGTGCCTTTCAGAGGATCTATGGTGGAAGCAAGAGGAATGGAAGCCGTCCCCCTCATTTCTGCAAGAGCAGTGGAGCTATTGCCAGACACATTCTTCAACAATTGCAAGACATGAATATTGTTGAGGTTGATCCAAAAGGAGGTAGGAGAATCACTTCTAGTGGTCAAAGGGATCTAGACCAAGTTGCGGGGCGAATTGTGGTTACTCCTTGA 432 0.4676 MANARTVKDVSPHEFVKAYSAHLKRSGKMELPEWTDIVKTARFKELAPYDPDWYYVRAASMARKIYLRGGLGVGAFQRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQDMNIVEVDPKGGRRITSSGQRDLDQVAGRIVVTP 143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere02g2153 143 PANTHER 40S RIBOSOMAL PROTEIN S19 5 140 IPR001266 GO:0003735|GO:0005840|GO:0006412
Dere02g2153 143 ProSitePatterns Ribosomal protein S19e signature. 90 109 IPR018277 GO:0003735|GO:0005840|GO:0006412
Dere02g2153 143 SMART Ribosomal_S19e_2 6 142 IPR001266 GO:0003735|GO:0005840|GO:0006412
Dere02g2153 143 Gene3D - 1 142 IPR036388 -
Dere02g2153 143 Pfam Ribosomal protein S19e 6 140 IPR001266 GO:0003735|GO:0005840|GO:0006412
Dere02g2153 143 FunFam 40S ribosomal protein S19 2 142 - -
Dere02g2153 143 SUPERFAMILY "Winged helix" DNA-binding domain 6 141 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere02g2153 Dere-ChrDere02 22162018 22164264 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere02g2153 1 143 Cytoplasmic Ribosomal Protein Gene Family AT3G02080 85.315 3.49e-93 264