Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere02g2150 ATGATTCTCCACTACTGGGCCTCCACCCATTTCACAAAAAAGTCGACCACGGTTCCGTTCCAACGCAAACTAAACTGCCCTTCGTCACATTATCAGAACAGTGCCTCTTCCCCATCATCTTCTCAGTCTCTCCTCCATACTCATGCTCTCTATGAATTTGAATACCCCATGGACTACACCACTGTGCCTGAATTGCAGCCAAATCCGACACCAGCGGCCCTGGCTTCTCACCCACCTTGTCTAGCCACATATCTCGCTTCAACCTTCCCTCCCCATTACCAATCATACCCTCAAAACCCTAACCCTTCTTCCGCAGACCCCCAATCTTCTCTTGGAACTCAAGAATTCCATGGTAGCGCCGGTGCGGAACCTGGGGTCAACCCTCCTGGTGTTGCTGCGTATGCCCCCTTGACCTCCAATGCAGTTAGCCATCTGGGACATGAAGTCCATGCCAATTACGCGTACGCTCACAACCCTATGGTAGATTCGAGCTCGTTGGTTGGGTCATCTGGATACTATTTTGACCCAAATGTGCAGAATTGGGCTGCTAGGGAGGCCGTTAGGCAGTACGGGGTGGAGCCGGTTGGCTATGGAGCTGCCATCCCTGTACCTTCTACTGGGTCGGAACAATTGGCTACTGCAAATCCTAATTCCGCATGGTGGGCTAACACCACAACTCAACCTCATGGCAATGGAACATGGAAGAAACGCCCAAAGAAAGTGAAAACTAAGGTTGTTCAATCTGCATATTGTGAAGTTTGCAAGATTGATTGTACCAGTAAGGACGTACTGGACCAGCATAAATTAGGAAAGAAGCACAAGAAGAACTTGGAGAAACTAAGAGAAGCATTAAGGCCACCGCATGTTCCTGTTCCTCCCACTGGGACATCGAATCCTGTTATAGGACCTCAACTGCTGGTTGACAAGAGCAAATCTGGTGGTGGGAGTAAGAATAAAAGGAAAACAATTGAAACACCAGAGGATTTGGAGAAAAAGAAAAAGAAGGTTCTTGAAGGGGGAGCAGCAGCTGAAGCAGTTAAAATTTGTGCTATTTGTAATGTGGTGTGTAATAGTGAGACAGTTTTCAATTATCATCTTGCAGGACAAAAGCATGCTGCTATGATGAAGAAACAAGCATCTGAACATAAACAATCAAATGCGAGCTGA 1167 0.4722 MILHYWASTHFTKKSTTVPFQRKLNCPSSHYQNSASSPSSSQSLLHTHALYEFEYPMDYTTVPELQPNPTPAALASHPPCLATYLASTFPPHYQSYPQNPNPSSADPQSSLGTQEFHGSAGAEPGVNPPGVAAYAPLTSNAVSHLGHEVHANYAYAHNPMVDSSSLVGSSGYYFDPNVQNWAAREAVRQYGVEPVGYGAAIPVPSTGSEQLATANPNSAWWANTTTQPHGNGTWKKRPKKVKTKVVQSAYCEVCKIDCTSKDVLDQHKLGKKHKKNLEKLREALRPPHVPVPPTGTSNPVIGPQLLVDKSKSGGGSKNKRKTIETPEDLEKKKKKVLEGGAAAEAVKICAICNVVCNSETVFNYHLAGQKHAAMMKKQASEHKQSNAS 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere02g2150 388 MobiDBLite consensus disorder prediction 313 327 - -
Dere02g2150 388 PANTHER ZINC FINGER PROTEIN 385B-LIKE 102 385 - -
Dere02g2150 388 Gene3D Classic Zinc Finger 320 380 - -
Dere02g2150 388 Gene3D Classic Zinc Finger 233 280 - -
Dere02g2150 388 SUPERFAMILY beta-beta-alpha zinc fingers 239 281 IPR036236 -
Dere02g2150 388 SMART c2h2final6 249 273 IPR013087 -
Dere02g2150 388 SMART c2h2final6 347 371 IPR013087 -
Dere02g2150 388 MobiDBLite consensus disorder prediction 93 127 - -
Dere02g2150 388 MobiDBLite consensus disorder prediction 93 116 - -
Dere02g2150 388 SUPERFAMILY beta-beta-alpha zinc fingers 346 383 IPR036236 -
Dere02g2150 388 SMART ZnF_U1_5 344 378 IPR003604 GO:0003676|GO:0008270
Dere02g2150 388 SMART ZnF_U1_5 246 280 IPR003604 GO:0003676|GO:0008270
Dere02g2150 388 MobiDBLite consensus disorder prediction 281 327 - -
Dere02g2150 388 Pfam Zinc-finger of C2H2 type 348 371 - -
Dere02g2150 388 Pfam Zinc-finger of C2H2 type 250 273 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere02g2150 Dere-ChrDere02 22140062 22142851 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere02g2150 245 375 C2H2 Transcription Factor Family AT5G61190 34.351 1.12e-13 70.9