LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Dere02g2133	ATGTGCGCTCTCTTCTCTCTTCCTAGGTGCTTGGAAAACAATTCTCAGAGTAGCAGCGGCGGGGAAAGCGGGGCCGACGTCGTCGTCGTCGACGACAGTCCAACCTCCAACTCCGCCGTCGAGTGCTACGCCTGCACTCAGGTGGGTGTCCCCGATTTCCACTCCACCAGCTGCGACAGCTATCACCCGCCGCAATGGGAGGCTTCCGCGGGTTCTTCATTGATCCCTATCCAGAGCAAAACTGCAGGGAAGAATCCCAGTAGGGCGACCCGACGACCCAAATCGGGGCCGTTTGGGGAAGTGTTGGACCCGAGGAGCAAGCGCGTGCAGAGGTGGAACCGGGCGTTGCTGCTGGCACGTGGGATGGCACTGGCGGTGGATCCGCTGTTCTTCTACGCGCTGTCGATAGGGAGGAATGGGACGCCGTGCCTCTACATGGACGGGGGGCTGGCGGCGATAGTGACGGTGCTTAGGACGTGCGTGGACGCTGTGCACGTGCTGCACGTGTGGCTGCAATTCAGGATGGCGTACGTGTCGAAGGAGTCCATGGTGGTTGGGTGCGGGAAGCTGGTGTGGGACGCACGTGCCATCGCATGGCATTACCTCAGGTCCCTCAGAGGCTTCTGGTTCGACGCCTTCGTCATCCTCCCCGTTCCCCAGGCAGTGTTTTGGCTCATACTCCCAAAATTGATAAGAGAAGAGCAAATTAAAATCATAATGACCATAATGCTATTGATCTTCTTGTTCCAATTTCTGCCCAAGGTTTACCACAGCATCTGCATGATGAGGAGAATGCAAAAAGTCACAGGCTATATCTTCGGCACTATATGGTGGGGCTTTGGCCTCAATCTCATAGCTTACTTCATTGCCTCTCATGTGGCTGGAGGGTGCTGGTATGTGCTTGCAATTCAACGTGTAGCGTCGTGCCTGAGGCAGCAGTGTGAAAGAGGGTATGGATGCGATCTCCCTTTGTCATGCTCAGATGAAGTGTGCTACAAGCTTCTGTCACCAACAGGCACGGTAGGGGATTCATGTGGTGGAAACTCCACAGTAGTGGTCAGAAAGCCACTGTGCTTAGATGGTCAAGGACCTTTCAAATATGGCATCTACCAGTGGGCTCTCCCAGTCATATCCAGCAACTCCTTGGCTGTCAAGATTCTTTATCCCATATTTTGGGGTTTGATGACCCTCAGCACTTTTGGCAATGACCTTGAGCCCACGAGTCACTGGTTGGAAGTGATTTTCAGCATATGCATCGTACTCAGTGGACTGCTGCTCTTCACTCTGTTGATTGGTAACATCCAGGTATTCTTACACGCAGTCATGGCAAAGAAAAGAAAAATGCAGCTGAGATGTCGTGACATGGAATGGTGGATGAGGAGGAGGCAGCTTCCGTCCCGTTTAAGGCAGAGAGTTCGCCAGTTTGAACGCCAGAGATGGGCTGCCATGGGAGGAGAGGACGAAATGGACATGATTAAAGACTTGCCTCAAGGATTGAGGAGAGACATCAAACGCTATCTTTGCTTAGACCTCATCAAAAAGGTGCCTCTGTTTCACAACTTGGATGATCTTATTCTCGACAACATCTGTGATAGGGTTAAACCTCTAGTCTTCTCTAAAGATGAAAAGATAATCAGAGAAGGGGACCCAGTACCGAGAATGGTGTTCATAGTTCGTGGGCGCATAAAACGGAACCAAAGCCTAAGCAAAGGCATGGTGGCCACAAGCATCATCGAAGCAGGAGGGTTTCTAGGGGACGAGCTTCTGTCGTGGTGCCTCCGCCGGCCGTTCGTCGACCGCCTTCCGGCCTCCTCCGCCACATTTATCTGCCTAGAATCAGCAGAAGCCTTCGGGTTAGACGCCGATCACCTCAGGTATATCACCGACCACTTCCGCTACAAATTCGCCAACGAAAGACTGAAGAGAACGGCCAGATATTACTCCTCCAATTGGAGAACCTGGGCTGCCGTCAACTTACAGTTTGCATGGCGACGTTACAGGCAGAGGACCAGAGGTCCGGTGACCCCTGTGACGGAAAATGGAGACAGTGGTAGTAGTGAACGGAGGCTGTTGCAGTATGCTGCCTTGTTCATGTCAATAAGGCCACACGACCACCTTGACTGA	2124	0.5273	MCALFSLPRCLENNSQSSSGGESGADVVVVDDSPTSNSAVECYACTQVGVPDFHSTSCDSYHPPQWEASAGSSLIPIQSKTAGKNPSRATRRPKSGPFGEVLDPRSKRVQRWNRALLLARGMALAVDPLFFYALSIGRNGTPCLYMDGGLAAIVTVLRTCVDAVHVLHVWLQFRMAYVSKESMVVGCGKLVWDARAIAWHYLRSLRGFWFDAFVILPVPQAVFWLILPKLIREEQIKIIMTIMLLIFLFQFLPKVYHSICMMRRMQKVTGYIFGTIWWGFGLNLIAYFIASHVAGGCWYVLAIQRVASCLRQQCERGYGCDLPLSCSDEVCYKLLSPTGTVGDSCGGNSTVVVRKPLCLDGQGPFKYGIYQWALPVISSNSLAVKILYPIFWGLMTLSTFGNDLEPTSHWLEVIFSICIVLSGLLLFTLLIGNIQVFLHAVMAKKRKMQLRCRDMEWWMRRRQLPSRLRQRVRQFERQRWAAMGGEDEMDMIKDLPQGLRRDIKRYLCLDLIKKVPLFHNLDDLILDNICDRVKPLVFSKDEKIIREGDPVPRMVFIVRGRIKRNQSLSKGMVATSIIEAGGFLGDELLSWCLRRPFVDRLPASSATFICLESAEAFGLDADHLRYITDHFRYKFANERLKRTARYYSSNWRTWAAVNLQFAWRRYRQRTRGPVTPVTENGDSGSSERRLLQYAALFMSIRPHDHLD	707

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Dere02g2133	707	PANTHER	CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED	89	670	-	-
	Dere02g2133	707	SUPERFAMILY	cAMP-binding domain-like	444	631	IPR018490	-
	Dere02g2133	707	Gene3D	Helix hairpin bin	443	508	-	-
	Dere02g2133	707	MobiDBLite	consensus disorder prediction	77	102	-	-
	Dere02g2133	707	Gene3D	-	142	440	-	-
	Dere02g2133	707	Gene3D	Jelly Rolls	515	633	IPR014710	-
	Dere02g2133	707	Pfam	Ion transport protein	112	435	IPR005821	GO:0005216\|GO:0006811\|GO:0016020\|GO:0055085
	Dere02g2133	707	CDD	CAP_ED	517	627	IPR000595	-
	Dere02g2133	707	SUPERFAMILY	Voltage-gated potassium channels	103	438	-	-
	Dere02g2133	707	ProSiteProfiles	cAMP/cGMP binding motif profile.	517	627	IPR000595	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Dere02g2133	Dere-ChrDere02	21966972	21971015	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Dere02g2133	38	707	Ion Channels	AT5G15410	79.321	0.0	1068