Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere02g2123 ATGGGTTGCATTAACTCCAAGAGGTTGGTTGCCGGAGATTCACCCGTGCACTCGGCTGTGCGCATCGAAAATGGGTCTGCGGTTGTGGAGCCTCCGTCCAGATCCCAATCGGGAATCTTAGTTGTTGACAAGAAAGGTGATGGAGAATCGGAGGATCGCAGTCGAGATGGGAAGAGGTCCAGGAAGGATAGCTCCAAAGGAAGCGGGAAATTCAGTTTCAAGATGGGGTTTTCGCATAGGTTCGTGGAAGCGGAGCTGAATGCGGCAGGTTGGCCACCTTGGCTCACCGCTGCTGCGGGGGAAGCTATTTATGGATGGGTGCCCCTTAGAGCTGATTCTTTTGAGAAATTAGACAAGATTGGACAAGGTACATATAGCAGTGTGTTCCGAGCACGTGAAGTTGCAACTGGGAGGATGTTTGCCCTGAAGAAGGTGCGATTTGACAATTTCCAACCTGAGAGTGTTAGGTTCATGTCAAGAGAAATTACAATTCTTCGCAGGCTTGACCATCCGAACATCATGAAATTGGAAGGTGTAATTACTTCCCGACTATCAAGTAGCATATACCTTGTCTTTGAATATATGGAGCATGATCTTGCAGGACTAGTATCTTGTCCTGACATCAAGTTCAGTGAGTCACAGGTGAAATGTTACATGAGGCAGCTATTGAGTGGACTTGAGCACTGTCACCTACGTGGTATTATGCATCGAGACATTAAAGTATCCAATATATTAGTAAATAATGACGGTATTCTCAAGATAGGTGATTTTGGATTGGCAAATACAATCAGCCAAAGTAACAGGCATCCATTAACGAGTCGTGTAGTGACTCTATGGTACCGTCCTCCTGAACTCTTGATGGGATCAACAAACTATGGAGTATCAGTGGATCTATGGAGTGTGGGTTGTGTATTTGGGGAACTTTTTCTGGGAAAGCCTCTCCTTAAGGGAAGAACTGAGGTCGAACAATTGCACAAAATTTTTAAGCTTTGTGGTTCTCCGCTTGATGAGTTCTGGAAGAAGTCTAGGCTTCCTCATGCAACAATGTTTAAACCTCAGATTAATTATGAAAGCTCTTTTCATGAGAGGTGTCAAGATCTTCCGGAAACTGCTGTAAAGCTAATGGAGACTCTACTATCCATTGACCCCTCTAAGCGTGGGACTGCCTCTTCTGCCCTAATGTCCGAGTATTTCAGCACCAAGCCGTACGCTTGTGATCCATCAAGCCTGCCAAAGTATCCACCCAACAAAGAAATGGATGCTAAAAATAGGGAAGATGTACGCAGGAAAAAAACTGGAGGTAAAGTGCTGGAGGCTACAACATCAAGAAAGCAAAGACAAGTACGTAAAGTTTTGCAAGAACCTAACAATTTCAATAAACGAGCTTCAACAGACGACAAGCAGAACAATTATCAAAAAGCTCTTAGAGATGATGTTAAAGCGAATCTTAACAAGGCAAGAGGAGCTATGCACAAGGAGTCATTAAAACCTTCCATGGATGCAATTTCAGAGACATCCCGGATCAATGGCGTGCCTCATGGCTATAGTATATTCTCAGGACCAGCACCAGCATCTGGAGCCAGTGGCTTCGCATGGGCCAAAAGGAGGAAACCAGAGGCTTCATCCACATTATCAGATGGCTCAAAAAGCAAAATTAGTGCACTGGATCCAGGCTTTGCAAAAGGCACATATAATTTAACCAGACATGTGATCGATGTCTCAGAAAGAAAATATAAGGACAACGCAGGCCATCAGGCTCAGCATGGTCAGCCGAAACACATTGATGCATCTGATACATGTTCAAATGTATCCATGATTTTTGATTCCACGGAACAAGCAGATGGTTTGATGAATACTCTGGGTCATAAAAAACAAGGCAATGAATGTATGCACCCTGCAGCTGGCAAATCAAGGTTAGGAAGAGGTAAAGAAACAATTCCGATTTTTTTTCTCTTCGTCTACGGTTTAATCCGCGATTTGAAAATGGATGGATCAACTGGCCGTGGTGGTGCTGGTGTGGACATGTTTTTGCCAAATTACAAGTTAGGGAAAACTCTTGGTATTGGATCCTTTGGTAAGGTGAAAATTGCAGAGCATGTATTGACTGGTCATAAAGTTGCCATCAAGATCCTTAACCGTCGTAAGATAAAGAATATGGAAATGGAAGAAAAAGTGAGAAGAGAAATCAAAATTTTAAGATTGTTCATGCATCCACACATTATACGACTTTATGAAGTCATAGAAACTCCAACAGATATATATGTTGTTATGGAGTATGTAAAATCTGGTGAGCTCTTTGACTACATAGTAGAAAAGGGTAGGTTGCAAGAAGATGAAGCTCGTAATTTTTTTCAGCAGATCATCTCTGGTGTGGAGTACTGTCACAGGAATATGGTGGTCCATAGAGACCTGAAGCCTGAGAATTTACTATTGGACTCCAAATGTAATGTCAAGATAGCTGATTTTGGTTTAAGCAACATCATGCGTGACGGCCACTTTCTTAAGACAAGTTGTGGGAGCCCAAACTATGCTGCTCCAGAGGTTATCTCTGGAAAATTGTATGCTGGACCTGAAGTGGATGTCTGGAGCTGTGGTGTAATTTTATATGCTCTTCTTTGTGGCACCCTTCCTTTTGATGATGAAAACATCCCTAACCTCTTCAAGAAAATAAAGGGTGGGATATACACTCTTCCTAGTCATTTATCACCTGGTGCTAGAGATCTGATACCGAGGATGCTTGTGGTTGATCCTATGAAGAGGATGACCATACCTGAGATCCGTCAACACCCATGGTTTCAAGCTCATCTCCCTCGTTATCTGGCAGTGCCACCACCAGATACTATACAACAAGCCAAAAAGATTGACGAGGAAATTCTTCAGGAAGTGGTTAATATGGGATTTGACAGGAATCAGTTGATTGAATCTCTACGCAACAGGATACAGAATGAGGGTACTGTGGCATACTATTTGTTGTTGGACAACCGCTTCAGTGTTTCAAGTGGCTATCTTGGTGCTGAGTTTCAAGAGAGTATGGATACTGGTTTTAATCGTATGCATCCCAGTGAAGTAGCTGCTCCAGCTGTTGGGAACCGCTTCCCAGGGTATATGGATTATCAAGGGATTGGAATGAGACCACAGTTCCCTGTTGAGAGAAAATGGGCCCTTGGGCTTCAGTCTCGAGCCCATCCTCGTGAAATAATGACTGAGGTCCTTAAAGCTCTGCAAGAATTGCATGTGTGTTGGAAGAAGATTGGACACTATAACATGAAGTGCAGGTGGGTTGCTGGCATTCTGGGTCATCGTGAAGGAATGGTTAACAATCACTACTTTGGAGATGATTCCACCATCACTGAGAATGATGCTGTTTCGAAGTCAAATGTAGTGAAGTTTGAGGTGCAGCTTTATAAAACTCGTGAAGAGAAGTATCTGCTTGATCTTCAAAGGGTCCAGGGCCCACAGTTTCTCTTCTTGGATCTTTGTGCTTCTTTCCTTGCACAGCTTCGTGTCCTCTAG 3513 0.4335 MGCINSKRLVAGDSPVHSAVRIENGSAVVEPPSRSQSGILVVDKKGDGESEDRSRDGKRSRKDSSKGSGKFSFKMGFSHRFVEAELNAAGWPPWLTAAAGEAIYGWVPLRADSFEKLDKIGQGTYSSVFRAREVATGRMFALKKVRFDNFQPESVRFMSREITILRRLDHPNIMKLEGVITSRLSSSIYLVFEYMEHDLAGLVSCPDIKFSESQVKCYMRQLLSGLEHCHLRGIMHRDIKVSNILVNNDGILKIGDFGLANTISQSNRHPLTSRVVTLWYRPPELLMGSTNYGVSVDLWSVGCVFGELFLGKPLLKGRTEVEQLHKIFKLCGSPLDEFWKKSRLPHATMFKPQINYESSFHERCQDLPETAVKLMETLLSIDPSKRGTASSALMSEYFSTKPYACDPSSLPKYPPNKEMDAKNREDVRRKKTGGKVLEATTSRKQRQVRKVLQEPNNFNKRASTDDKQNNYQKALRDDVKANLNKARGAMHKESLKPSMDAISETSRINGVPHGYSIFSGPAPASGASGFAWAKRRKPEASSTLSDGSKSKISALDPGFAKGTYNLTRHVIDVSERKYKDNAGHQAQHGQPKHIDASDTCSNVSMIFDSTEQADGLMNTLGHKKQGNECMHPAAGKSRLGRGKETIPIFFLFVYGLIRDLKMDGSTGRGGAGVDMFLPNYKLGKTLGIGSFGKVKIAEHVLTGHKVAIKILNRRKIKNMEMEEKVRREIKILRLFMHPHIIRLYEVIETPTDIYVVMEYVKSGELFDYIVEKGRLQEDEARNFFQQIISGVEYCHRNMVVHRDLKPENLLLDSKCNVKIADFGLSNIMRDGHFLKTSCGSPNYAAPEVISGKLYAGPEVDVWSCGVILYALLCGTLPFDDENIPNLFKKIKGGIYTLPSHLSPGARDLIPRMLVVDPMKRMTIPEIRQHPWFQAHLPRYLAVPPPDTIQQAKKIDEEILQEVVNMGFDRNQLIESLRNRIQNEGTVAYYLLLDNRFSVSSGYLGAEFQESMDTGFNRMHPSEVAAPAVGNRFPGYMDYQGIGMRPQFPVERKWALGLQSRAHPREIMTEVLKALQELHVCWKKIGHYNMKCRWVAGILGHREGMVNNHYFGDDSTITENDAVSKSNVVKFEVQLYKTREEKYLLDLQRVQGPQFLFLDLCASFLAQLRVL 1170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere02g2123 1170 FunFam Non-specific serine/threonine protein kinase 1056 1168 - -
Dere02g2123 1170 ProSiteProfiles Protein kinase domain profile. 114 398 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere02g2123 1170 SUPERFAMILY Protein kinase-like (PK-like) 106 404 IPR011009 -
Dere02g2123 1170 SMART uba_6 955 992 IPR015940 -
Dere02g2123 1170 Gene3D Transferase(Phosphotransferase) domain 1 672 1009 - -
Dere02g2123 1170 ProSitePatterns Protein kinases ATP-binding region signature. 120 143 IPR017441 GO:0005524
Dere02g2123 1170 MobiDBLite consensus disorder prediction 408 430 - -
Dere02g2123 1170 SUPERFAMILY KA1-like 989 1169 IPR028375 -
Dere02g2123 1170 FunFam probable serine/threonine-protein kinase At1g54610 197 437 - -
Dere02g2123 1170 ProSiteProfiles Protein kinase domain profile. 680 932 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere02g2123 1170 Coils Coil 1167 1170 - -
Dere02g2123 1170 Gene3D Transferase(Phosphotransferase) domain 1 197 438 - -
Dere02g2123 1170 FunFam Non-specific serine/threonine protein kinase 672 759 - -
Dere02g2123 1170 FunFam probable serine/threonine-protein kinase At1g54610 101 196 - -
Dere02g2123 1170 SUPERFAMILY Protein kinase-like (PK-like) 677 949 IPR011009 -
Dere02g2123 1170 ProSiteProfiles Kinase associated domain 1 (KA1) profile. 1121 1169 IPR001772 -
Dere02g2123 1170 ProSitePatterns Protein kinases ATP-binding region signature. 686 709 IPR017441 GO:0005524
Dere02g2123 1170 Gene3D Phosphorylase Kinase; domain 1 102 196 - -
Dere02g2123 1170 SMART serkin_6 114 398 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere02g2123 1170 SMART serkin_6 680 932 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere02g2123 1170 Gene3D Kinase associated domain 1, KA1 1056 1168 - -
Dere02g2123 1170 CDD STKc_CDK9_like 114 398 - -
Dere02g2123 1170 Pfam Kinase associated domain 1 1127 1169 IPR001772 -
Dere02g2123 1170 ProSitePatterns Serine/Threonine protein kinases active-site signature. 234 246 IPR008271 GO:0004672|GO:0006468
Dere02g2123 1170 PANTHER MAP/MICROTUBULE AFFINITY-REGULATING KINASE 609 968 - -
Dere02g2123 1170 MobiDBLite consensus disorder prediction 24 68 - -
Dere02g2123 1170 MobiDBLite consensus disorder prediction 44 68 - -
Dere02g2123 1170 ProSitePatterns Serine/Threonine protein kinases active-site signature. 799 811 IPR008271 GO:0004672|GO:0006468
Dere02g2123 1170 SUPERFAMILY UBA-like 943 991 IPR009060 GO:0005515
Dere02g2123 1170 CDD UBA_SnRK1_plant 954 994 - -
Dere02g2123 1170 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 953 993 IPR015940 -
Dere02g2123 1170 CDD STKc_AMPK_alpha 677 932 - -
Dere02g2123 1170 FunFam Non-specific serine/threonine protein kinase 671 1010 - -
Dere02g2123 1170 Pfam Protein kinase domain 114 398 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere02g2123 1170 Pfam Protein kinase domain 680 932 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere02g2123 1170 CDD AMPKA_C 1050 1167 - -
Dere02g2123 1170 Pfam UBA/TS-N domain 954 990 IPR015940 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere02g2123 Dere-ChrDere02 21865136 21883114 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere02g2123 684 922 Core Cell Cycle Gene Families AT5G10270 28.819 2.04e-25 110
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_AMPK Dere02g2123 Pkinase 9e-69 CL0016