Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere02g2122 ATGGCCAGGAGGAGAAAGGCTGTGGAAATAGAGGAAGAGAGAAGCATGAAATGGGATGAGATGGTAAAGGAAGCTGAAGCACTGGGAGGGACCAGAAGAGCCAGGAAGCGTTTTGTTGGGGTCAGACAAAGGCCTTCAGGAAGGTGGGTGGCTGAGATTAAGGACACTATTCAGAAGATAAGGGTTTGGTTGGGAACTTTTGACACTGCAGAGGAAGCAGCCAGAGCTTATGATGAGGCTGCTTGTCTGCTTCGTGGTGCCAACACTAGGACCAATTTCTGGCCTTGTTCTAATTCTTCTTCAACCTCAGCTCTTCCCTCTAAAATCACCAATCTCCTCCTTCAAAGGCTTAAAGCAAGGAACAACTCTTGCTCTGCTTCTTCTTTATCCTCTTCCACTTCTGATTTCTCTTCCTCTGGTTCTTTTCTTGTTAGTCACCAAGAGAAGCAGCAAGCAGATGTGTATAAAGAAGAAGAAGCTGCAGATTTTTGCATTGACCAGTTCACTGATTTTCTTAATGATCCTGAAGATTACAGCGCAGGCAACACTGAGATTAGTCACTCTACTAATAATAGTGCACAAGCTGATTCCTTGACTAGTAGTTTTGAATCATGTTTGACTGAAAAAGAGGAGCGCAGGGGAAGAGAAATGGGTTTGGAAAATAATCTCAGCAATGTTGCTGACTGCAATTCAGGAGGGAAAAGGGAGGAAGAAAGTGAAGAAGAAATCACCCTTCTAGGTGTCCAAGATTTTGAGTTTCTGGACAATGTTGCTCCATCATGTTACTATTCTGCTTTTGAGATGGCTGAAGAGATAGTGGAGCCTGTGGTGGAGGCAGAGAGCTATGGGGATGAGCCTTCCATGCTCAGAGCTGCCATGAAGAGGATGAAGTATGAGAGGAAGTTCTCAGCTTCCCTTTATGCATTCAATGGGATACCTGAGTGCTTGAAGTTAAAACTAGGATCTGGAAACTTGAAGGGAAGAGGGATTTCTGATCATTTAACCGACCTTCAGATGGCATGTAGTAGCAAGGAGAAATTTGAGGAGAATAAGGAGGATATGGAGGTAATGGATAGGAAAGAGGAAGAAAGGCCACAAACACTAAACGAGGTGGATTGTTCTTCATCTTCTTCCAGTGTTGATGGTGAATTGCTTCTTTGGAATTCATTGGATCTTCCTCCCATCTGCTTTGTTAACTAA 1200 0.4383 MARRRKAVEIEEERSMKWDEMVKEAEALGGTRRARKRFVGVRQRPSGRWVAEIKDTIQKIRVWLGTFDTAEEAARAYDEAACLLRGANTRTNFWPCSNSSSTSALPSKITNLLLQRLKARNNSCSASSLSSSTSDFSSSGSFLVSHQEKQQADVYKEEEAADFCIDQFTDFLNDPEDYSAGNTEISHSTNNSAQADSLTSSFESCLTEKEERRGREMGLENNLSNVADCNSGGKREEESEEEITLLGVQDFEFLDNVAPSCYYSAFEMAEEIVEPVVEAESYGDEPSMLRAAMKRMKYERKFSASLYAFNGIPECLKLKLGSGNLKGRGISDHLTDLQMACSSKEKFEENKEDMEVMDRKEEERPQTLNEVDCSSSSSSVDGELLLWNSLDLPPICFVN 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere02g2122 399 FunFam ethylene-responsive transcription factor RAP2-11 36 95 - -
Dere02g2122 399 MobiDBLite consensus disorder prediction 176 238 - -
Dere02g2122 399 Gene3D AP2/ERF domain 36 94 IPR036955 GO:0003700|GO:0006355
Dere02g2122 399 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 18 303 - -
Dere02g2122 399 MobiDBLite consensus disorder prediction 179 204 - -
Dere02g2122 399 CDD AP2 36 93 IPR001471 GO:0003700|GO:0006355
Dere02g2122 399 MobiDBLite consensus disorder prediction 348 379 - -
Dere02g2122 399 PRINTS Ethylene responsive element binding protein signature 60 76 IPR001471 GO:0003700|GO:0006355
Dere02g2122 399 PRINTS Ethylene responsive element binding protein signature 38 49 IPR001471 GO:0003700|GO:0006355
Dere02g2122 399 SMART rav1_2 37 100 IPR001471 GO:0003700|GO:0006355
Dere02g2122 399 ProSiteProfiles AP2/ERF domain profile. 37 94 IPR001471 GO:0003700|GO:0006355
Dere02g2122 399 Pfam AP2 domain 37 86 IPR001471 GO:0003700|GO:0006355
Dere02g2122 399 MobiDBLite consensus disorder prediction 348 368 - -
Dere02g2122 399 Coils Coil 344 364 - -
Dere02g2122 399 SUPERFAMILY DNA-binding domain 37 94 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere02g2122 Dere-ChrDere02 21862894 21864093 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere02g2122 35 113 AP2-EREBP Transcription Factor Family AT5G19790 73.418 7.69e-33 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Dere02g2122 AP2 7.7e-15 CL0081