Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere02g2121 ATGACTTCCCAGAAGTCAAGTCTTGCAAGACTTCAGCCTCCTTCTTACAATACTACTCCTTTCCTTCCTACTACGTCCCCTTACGAGAAAGAGCTTCACAATACCAATAACGGAGTCCCAAAGAATCTTGATGATTACTTTAACTCTTTTCCACCTGGATATTTCTTTCGCCCTACACATGAAGAACTCATCACATTCTATTTGAGCAAGAAAATCAAGAATGAGCCTTTACCACCAAATCGTATGGCGGAAATTGATATATATCTGCACAATCCTGAAACTCTTTGCAAGCAGTACAGGAGTGTTGGAGAAGACGAATGAACAAGTGCTGATGATATGACGTTGGATGATTACGTTCTATGCAAGCTCTACAAGAAACCTGGGAACCCAAATACAAGTGACAGAACTAATGGGGAAAGGAAGAAGATGGAGAAGGGAGGTTCTGAAACCAATGATACTGCCATTGATCAAAGCAATGAATATAATTTGTCATTGCCAGAAATACCTCCAAGCAATGAATGTATAACTCAATCATGGTCAGAAGTGCCTGCAGAGCAGAGTCAATGTAACCCTAACTATCTGGCATGGGATGACCACATGGCCTTGACCAAGAATGAGGGCATACCTCCAGATTTAAGAACATCCTCATTCGAAACTGATCAATCATTGCTGGAAGTTACACCTCCAAGTTATGAACATAATCAAACGGGGTCAGAAATACCTCCAAGCTATGAATATATAACTCAATCATGTTCAGAAATACCTCAAGATCAGCCTCAGTGTAACCCTAGCAACATGGCATGTTATGATCACGTGGCCTCGAACATGAGAGAGGGCATATCTCCAGGTTCAAGAACGTTCTCAGAATTTGAGTCTTCAGGAACATTCCCAGAAACAAAGTCTTCGGGGTTAGTACTGGCGGAGGAGCCATTTAATTACTGTGTGCCTTCTATGGAGGACACACAGTGTTGTAGTGAAAAGGTTGATGCTACACTTGGTTCCAAGTCAACACAGATGGAGCCAATTACCTTAAACCCTCCCTCACCAGGATTGGCAATCCCAACTCAGTATTACAATCAAGAGGATTTGGGTTGGGATAGTGTAAAAAGTTTGCAGAACTTTGGATCACTACCCTTATTTGATCCAGACTACCATATTGTCGAACACGTCAAATTATGGGACAATATTCAGCCCAATAATAGTCTTCTATATAGCCCTATTGTGCCTAGCAATAATTTTTGA 1242 0.4138 MTSQKSSLARLQPPSYNTTPFLPTTSPYEKELHNTNNGVPKNLDDYFNSFPPGYFFRPTHEELITFYLSKKIKNEPLPPNRMAEIDIYLHNPETLCKQYRSVGEDEXTSADDMTLDDYVLCKLYKKPGNPNTSDRTNGERKKMEKGGSETNDTAIDQSNEYNLSLPEIPPSNECITQSWSEVPAEQSQCNPNYLAWDDHMALTKNEGIPPDLRTSSFETDQSLLEVTPPSYEHNQTGSEIPPSYEYITQSCSEIPQDQPQCNPSNMACYDHVASNMREGISPGSRTFSEFESSGTFPETKSSGLVLAEEPFNYCVPSMEDTQCCSEKVDATLGSKSTQMEPITLNPPSPGLAIPTQYYNQEDLGWDSVKSLQNFGSLPLFDPDYHIVEHVKLWDNIQPNNSLLYSPIVPSNNF 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere02g2121 413 MobiDBLite consensus disorder prediction 1 37 - -
Dere02g2121 413 Pfam No apical meristem (NAM) protein 51 139 IPR003441 GO:0003677|GO:0006355
Dere02g2121 413 Gene3D NAC domain 59 107 IPR036093 GO:0003677|GO:0006355
Dere02g2121 413 PANTHER NAC TRANSCRIPTION FACTOR 56 50 99 - -
Dere02g2121 413 MobiDBLite consensus disorder prediction 126 174 - -
Dere02g2121 413 MobiDBLite consensus disorder prediction 135 149 - -
Dere02g2121 413 SUPERFAMILY NAC domain 48 105 IPR036093 GO:0003677|GO:0006355
Dere02g2121 413 MobiDBLite consensus disorder prediction 150 174 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere02g2121 Dere-ChrDere02 21845744 21847463 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere02g2121 42 106 NAC Transcription Factor Family AT5G39820 38.462 7.96e-08 52.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Dere02g2121 NAM 8.2e-09 No_clan