Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Dere02g2117 ATGGCAGCTTGTGTAATCACGGTTTCACAGACCGGGGGCGGAGACTATCGGACGGTGCAGGAAGCAATTGATGCCATCCCACTCGGCAACAACCGTCGGACGGTGATTCGAGTATCGCCGGGAATCTACAAGCAGCCGGTGTACATACCCAAGACTAAGAATTTCATCACCCTTGCTGGTCTGTGCCCGGAGGATACTGTGCTTACCTGGAACAATACCGCCACCAGAATCGAACACCACCAGGCTGCTCGGATAATAGGGACTGGTACTTTTGGTTGCGGTAGCACCATTGTGGAAGGGGAGGATTTTATTGCCGAGAACATCACATTCGAGAATTCCGCCCCCCAGGGTTCAGGGCAAGCAGTAGCACTTAGAGTTACAGCAGATCGATGTGCCTTCTATAATTGCAGGTTCCTTGGATGGCAGGACACTCTGTACTTACATTATGGCAAACAGTACTTGAAAGATTGTTATATTGAAGGAAGCGTGGACTTCATTTTTGGCAATAGCACTGCTCTTTTGGAACATTGCCATGTCCACTGCAAGTCTCAAGGCTTCATAACTGCACAGAGCAGAAAATCTTCTCAGGAAACAACAGGTTATGTATTCCTAAGATGTGTCATCACGGGTAATGGAGGTACTTCATATGCACACCTTGGACGACCCTGGGGACCATTTGGAAGAGTGGTCTTTGCATATACTTATATGGATCAATGCATAAAGCATGTTGGCTGGAATAATTGGGATAAAGTTGAGAATGAGAGAACTGCTTGCTTTTATGAATACAGGTGTTTTGGCCACGGTTGCTGTCCATCCAAACGAGTACCATGGGCTAGAGAATTGATGGATGAAGAAGCAGAGCAGTTCCTGACGCATCGTTTCATTGACCCAGATGCTAATAGACCTTGGCTTGCCCAAAGAATGGCCTTAAGGATTCCATATTCTGCTTAG 951 0.4711 MAACVITVSQTGGGDYRTVQEAIDAIPLGNNRRTVIRVSPGIYKQPVYIPKTKNFITLAGLCPEDTVLTWNNTATRIEHHQAARIIGTGTFGCGSTIVEGEDFIAENITFENSAPQGSGQAVALRVTADRCAFYNCRFLGWQDTLYLHYGKQYLKDCYIEGSVDFIFGNSTALLEHCHVHCKSQGFITAQSRKSSQETTGYVFLRCVITGNGGTSYAHLGRPWGPFGRVVFAYTYMDQCIKHVGWNNWDKVENERTACFYEYRCFGHGCCPSKRVPWARELMDEEAEQFLTHRFIDPDANRPWLAQRMALRIPYSA 316
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Dere02g2117 316 ProSitePatterns Pectinesterase signature 2. 159 168 IPR033131 -
Dere02g2117 316 FunFam Pectinesterase 2 309 - -
Dere02g2117 316 Pfam Pectinesterase 6 296 IPR000070 GO:0030599|GO:0042545
Dere02g2117 316 Gene3D - 2 310 IPR012334 -
Dere02g2117 316 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 5 303 - -
Dere02g2117 316 SUPERFAMILY Pectin lyase-like 2 303 IPR011050 -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Dere02g2117 Dere-ChrDere02 21803770 21807234 Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere02g2117 5 309 Carbohydrate Esterase AT5G47500 39.365 1.31e-71 224