Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Dere02g2108 | ATGGAGAGATCCTTGGGATCAGTGAAAACAGGTAAGTGGTCTAAAGAAGAAGATGATCTTCTAAAGGAGTGTGTTCACAAGTTTGGAGAGGGAAAATGGCACCTTGTTCCTCAAAGAGCTGGCTTGAAGAGATGCAGAAAAAGCTGTAGACTGAGGTGGTTAAACTATCTAAAACCAGATATCAAGAGAGGAGACTTTACTGAGGATGAAGTTGACATGATGACCAGGCTGCACAGACTCTTGGGAAACAGATGGTCACTGATAGCTGGAAGGCTTCCTGGACGAACATCTAACGATGTGAAAAACTATTGGAACACCAACATGTGTAAGAAGGGACAACATTCTTCTCACAAAAGGAAGTCAAAAGAAAAATCAAAGGATATACCCTCGAAATCCCATACACCCACAGTCACAGTAATAAGACCTCGAGCTTTCAGTTTCTCAAGAAATTCGACTTTGTTGAGACAGCAAACTATAGCTACAGTTAGTGATGATAATAATAACAACAATAATAATCATACAAGCAGTGGCGCAAATGAAAAGCCACGACAGGTAGATGAGGATACTTCGATGGAGTGGTGGAAAAGTTTGCCTCAGGACAATGACATTGAGAATCAAGGCCATGAACAAAACGGCTCCTCGTCATTTTTATCATCTATGACTGAGCAAGATGGGAAAAAGTCTGATCAGTTCTGGGATGAGGAACTTACTAATTGGATTAATGACTTTCCTTTACACAGTACACTCTAA | 750 | 0.4067 | MERSLGSVKTGKWSKEEDDLLKECVHKFGEGKWHLVPQRAGLKRCRKSCRLRWLNYLKPDIKRGDFTEDEVDMMTRLHRLLGNRWSLIAGRLPGRTSNDVKNYWNTNMCKKGQHSSHKRKSKEKSKDIPSKSHTPTVTVIRPRAFSFSRNSTLLRQQTIATVSDDNNNNNNNHTSSGANEKPRQVDEDTSMEWWKSLPQDNDIENQGHEQNGSSSFLSSMTEQDGKKSDQFWDEELTNWINDFPLHSTL | 249 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Dere02g2108 | 249 | SMART | sant | 62 | 110 | IPR001005 | - | |
| Dere02g2108 | 249 | SMART | sant | 9 | 59 | IPR001005 | - | |
| Dere02g2108 | 249 | ProSiteProfiles | Myb-type HTH DNA-binding domain profile. | 7 | 61 | IPR017930 | - | |
| Dere02g2108 | 249 | CDD | SANT | 12 | 57 | IPR001005 | - | |
| Dere02g2108 | 249 | Gene3D | - | 64 | 134 | - | - | |
| Dere02g2108 | 249 | MobiDBLite | consensus disorder prediction | 194 | 225 | - | - | |
| Dere02g2108 | 249 | FunFam | Myb transcription factor | 10 | 62 | - | - | |
| Dere02g2108 | 249 | MobiDBLite | consensus disorder prediction | 106 | 142 | - | - | |
| Dere02g2108 | 249 | CDD | SANT | 66 | 108 | IPR001005 | - | |
| Dere02g2108 | 249 | ProSiteProfiles | Myb-like domain profile. | 5 | 57 | IPR001005 | - | |
| Dere02g2108 | 249 | MobiDBLite | consensus disorder prediction | 160 | 228 | - | - | |
| Dere02g2108 | 249 | MobiDBLite | consensus disorder prediction | 160 | 179 | - | - | |
| Dere02g2108 | 249 | ProSiteProfiles | Myb-type HTH DNA-binding domain profile. | 62 | 112 | IPR017930 | - | |
| Dere02g2108 | 249 | Pfam | Myb-like DNA-binding domain | 10 | 57 | IPR001005 | - | |
| Dere02g2108 | 249 | Pfam | Myb-like DNA-binding domain | 63 | 106 | IPR001005 | - | |
| Dere02g2108 | 249 | Gene3D | - | 10 | 62 | - | - | |
| Dere02g2108 | 249 | PANTHER | TRANSCRIPTION FACTOR MYB8-RELATED-RELATED | 8 | 205 | - | - | |
| Dere02g2108 | 249 | ProSiteProfiles | Myb-like domain profile. | 58 | 108 | IPR001005 | - | |
| Dere02g2108 | 249 | SUPERFAMILY | Homeodomain-like | 8 | 104 | IPR009057 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Dere02g2108 | Dere-ChrDere02 | 21691160 | 21692599 | Dispersed/Proximal |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Dere02g2108 | 1 | 209 | MYB Transcription Factor Family | AT1G66370 | 47.982 | 2.11e-58 | 184 |
Transcription factors information