Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere02g2106 ATGGAGAGATCCTCGGGAGTGAAAAGAGTTAAGTGGTCTAAAGAAGAAGATGATCTTCTAAAGCAGTGTGTTCACAAGTTTGGGGAGGGAAGATGGCACCTTGTTCCTCAAAGAGCTGTTACAGTTAGCGCTGATGATGATAATAATAATAATTCTAATAGCAATGGCGCAAAGGAAAATGCAAATCAGGTAGATGAGGATTCTTCGATGGAGTGTTGGAAAAGTTTGCTCCATGGCAATGACATTGAGAAGCAAGGCCATGAACCAAATGGCTCGTCGTCATTATCATCATATATCACTGAGCAAGATGGGATGCTTGACCCGTTTTGGGATGTGGAACTTACTAATTGGATATATGACTTTCCTATCATGCATAGTACAAACTAA 387 0.4057 MERSSGVKRVKWSKEEDDLLKQCVHKFGEGRWHLVPQRAVTVSADDDNNNNSNSNGAKENANQVDEDSSMECWKSLLHGNDIEKQGHEPNGSSSLSSYITEQDGMLDPFWDVELTNWIYDFPIMHSTN 128
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere02g2106 128 MobiDBLite consensus disorder prediction 39 70 - -
Dere02g2106 128 Pfam Myb-like DNA-binding domain 9 38 IPR001005 -
Dere02g2106 128 CDD SANT 11 38 IPR001005 -
Dere02g2106 128 Gene3D - 3 59 - -
Dere02g2106 128 SUPERFAMILY Homeodomain-like 6 38 IPR009057 -
Dere02g2106 128 MobiDBLite consensus disorder prediction 42 69 - -
Dere02g2106 128 MobiDBLite consensus disorder prediction 79 98 - -
Dere02g2106 128 ProSiteProfiles Myb-like domain profile. 4 38 IPR001005 -
Dere02g2106 128 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 4 46 IPR017930 -
Dere02g2106 128 SMART sant 8 79 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere02g2106 Dere-ChrDere02 21666674 21672011 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere02g2106 4 39 MYB Transcription Factor Family AT1G56650 55.556 5.61e-10 53.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Dere02g2106 Myb_DNA-binding 4e-08 CL0123