Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere02g2095 ATGGGTCGATCACCATGCTGCGACAAGGTGGGCTTAAAGAAAGGACCATGGACACCTGAGGAAGATCAGAAACTGTTAGCTTATATTGAAGAACATGGCCATGGAAGCTGGCGTGCCTTGCCGGCAAAAGCTGGACTTCAGAGGTGTGGTAAGAGCTGCAGACTGAGATGGACCAATTATCTCAGGCCTGATATTAAGAGGGGAAAGTTCAGTTTGCAAGAAGAGCAAACCATCATTCAACTCCATGCCCTCTTAGGGAACAGGTGGTCGGCTATAGCTACACACTTGCCAAAGAGAACAGATAATGAGATCAAGAACTACTGGAATACGCATCTTAAGAAAAGGTTAGCAAAAATGGGAATTGACCCGGTCACCCACAAGCCCAAGAACGATGCCCTTCTCTCCATTGACGGCCAATCCAAGAGTGCTGCTAACCTTAGTCACATGGCTCAATGGGAGAGTGCTAGGCTTGAAGCTGAAGCAAGGTTGGTTAGAGAATCAAAACTACGTTCGCATTCATTGCAGCAGCAGCATCAGCTTTGCACCTCTGGGTTTTCATCTTCATCTTCTGCTTCAACTTCAGCCCCAGTTCTGAATAAACCAGAGGTCCCACCGATTTCCTCACGGTCTCTAGATGTGCTGAAGGCTTGGAATGGTGGTTGGATAAAATCTACTGAAGGCCATAATGTTGGTGGCGACCTTGAGTCCCCTACGTCTTCCCTCACTTTCTCTGAGAACGCACCACCAATTTTGACAAGTGGACTTGGAGAGAGTACAATGCCTATGATTGAGTTTGTGGGCACTTCAGGTTCTTCTGAGACAGGAGTCGTGAAAGAGGAAGGCGAGCAAGAGTGGAAAGGTTATGAAAGTTCAGTCCATCTGCCAGACTATAAAGATGGTATAGAAAACTCAATGTCTTTTGCGTCTAGCCTGCATGAGTTGACAATGTCAATGGAAAGCACATGGACATCTGAGTCTCTTAGGACTAGTACTGATGCTATTGCCGAGGAAGGATTCACCAATCTTCTGCTTAATACCAGATCCGATGACCGGAGTTTATCGGAGGAGGGCGGAGGAGAGTCTAATAATTGTGATGGTAGTGGAGGCAGTGGGAGTGACTTCTACGAAGATAACAAGAACTACTGGAACAGCATTCTTAACTTAGTGAACTCTTCCCCCTCTGATTCCCCCATGTTCTGA 1200 0.4675 MGRSPCCDKVGLKKGPWTPEEDQKLLAYIEEHGHGSWRALPAKAGLQRCGKSCRLRWTNYLRPDIKRGKFSLQEEQTIIQLHALLGNRWSAIATHLPKRTDNEIKNYWNTHLKKRLAKMGIDPVTHKPKNDALLSIDGQSKSAANLSHMAQWESARLEAEARLVRESKLRSHSLQQQHQLCTSGFSSSSSASTSAPVLNKPEVPPISSRSLDVLKAWNGGWIKSTEGHNVGGDLESPTSSLTFSENAPPILTSGLGESTMPMIEFVGTSGSSETGVVKEEGEQEWKGYESSVHLPDYKDGIENSMSFASSLHELTMSMESTWTSESLRTSTDAIAEEGFTNLLLNTRSDDRSLSEEGGGESNNCDGSGGSGSDFYEDNKNYWNSILNLVNSSPSDSPMF 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere02g2095 399 CDD SANT 69 112 IPR001005 -
Dere02g2095 399 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 236 - -
Dere02g2095 399 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Dere02g2095 399 CDD SANT 16 61 IPR001005 -
Dere02g2095 399 Gene3D - 13 66 - -
Dere02g2095 399 MobiDBLite consensus disorder prediction 267 289 - -
Dere02g2095 399 FunFam MYB-related transcription factor 13 66 - -
Dere02g2095 399 SMART sant 66 114 IPR001005 -
Dere02g2095 399 SMART sant 13 63 IPR001005 -
Dere02g2095 399 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Dere02g2095 399 MobiDBLite consensus disorder prediction 181 197 - -
Dere02g2095 399 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Dere02g2095 399 MobiDBLite consensus disorder prediction 357 371 - -
Dere02g2095 399 Gene3D - 69 116 - -
Dere02g2095 399 FunFam MYB transcription factor 69 116 - -
Dere02g2095 399 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Dere02g2095 399 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Dere02g2095 399 MobiDBLite consensus disorder prediction 181 201 - -
Dere02g2095 399 MobiDBLite consensus disorder prediction 347 371 - -
Dere02g2095 399 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Dere02g2095 399 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere02g2095 Dere-ChrDere02 21521279 21523220 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere02g2095 1 399 MYB Transcription Factor Family AT3G01140 53.865 1.37e-126 367
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Dere02g2095 Myb_DNA-binding 1.5e-15 CL0123