Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere02g2083 ATGCTAATTTTAAAGGACGAACAGATCGATGAGATGGGCTGTGACTACTGGAATGGCGAAACCATACTCTTACCATTTGTAGATGCTTCCCCTCTATATCTACCTCTCTCTCCTCCCCTTCTTTTCTTCTCATTTTATCCACAGGTCATCATTGTAATTACAATAATGTCTTCCGAAGCCAACTCATCGGATTCATCGTCTTCTCCAACCCCAAACGAAGTGGAAGACATCCAAATCCGAAGGCTCACTCTGCTTCTCCCTTTGATTTTCAGGTTAGCAGCTCGCCAGCAAAATCCCGATGACCCGACCCCGCATCATCCCCTCCGGGTCATCCTGTTCAACCCGGCTACGGGAACCACCATCTTGATCGACCGCTCCGGTGACCTGGAGTCGCTGTTCGGGGGGGTGTCGAGGAAGCCGAGGTTGTTGCCGGCGTCGAAGGATTCGATGGAGGCGATGCCGAGGGTGGTGGTGGCTGAGGAAAATACGGATTGTGCGATTTGCTTGGAAGATTACGAAATTGGGGACGAAGCTAGGGAGATGCCATGCAAGCATAGGTTTCACTCTGGGTGCATCGAGAAGTGGCTGGGAATTCATGGTTCGTGTCCAATTTGCCGATTCTATATGCCCCTGGCTGGTATGGACGACGAGATAGACGGTGGCGAAACAAGTGAAACACCAGAGAGCAGTGATGACCTCATGGATGCGGCTTTGGACCATTTTCGGGGCTTCGAGTATTCGGATCCTAGTTTACCCTAA 759 0.5086 MLILKDEQIDEMGCDYWNGETILLPFVDASPLYLPLSPPLLFFSFYPQVIIVITIMSSEANSSDSSSSPTPNEVEDIQIRRLTLLLPLIFRLAARQQNPDDPTPHHPLRVILFNPATGTTILIDRSGDLESLFGGVSRKPRLLPASKDSMEAMPRVVVAEENTDCAICLEDYEIGDEAREMPCKHRFHSGCIEKWLGIHGSCPICRFYMPLAGMDDEIDGGETSETPESSDDLMDAALDHFRGFEYSDPSLP 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere02g2083 252 ProSiteProfiles Zinc finger RING-type profile. 165 206 IPR001841 -
Dere02g2083 252 FunFam E3 ubiquitin-protein ligase RNF181 135 212 - -
Dere02g2083 252 SUPERFAMILY RING/U-box 158 210 - -
Dere02g2083 252 SMART ring_2 165 205 IPR001841 -
Dere02g2083 252 Pfam Ring finger domain 164 206 IPR001841 -
Dere02g2083 252 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 83 210 - -
Dere02g2083 252 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 136 211 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere02g2083 Dere-ChrDere02 21402234 21402992 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere02g2083 77 218 C3H Transcription Factor Family AT1G26800 42.466 1.01e-32 117