Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere02g2077 ATGCAGACGACAACCCAAGATATCTGTGACTTGATTACTGAAGGAGACCACCTGCAAAACCCAAGAACCCAGAACCAAGCTTCTTTTCTTTCCTTTGCGAAACTTGCAGAGTATTACCCTCCTGGGTTTCCAAGGAAGGTACTGGCAGAGACTATAGGGACATATCTGTTGGTGTTTGTGGCAAGTGGTTCGTCTGCTCTTAATGCCATTGATGAACAAGAAATCTCAAAACTTGGAGCTTCACTTGCAGGAGGATTCATCGTGACTGTGATGATCTATTCGATCGGACACATCTCTGGCGCCCACATGAACCCAGCAGTCTCCTTAGCTTTTGCCGCTTTGAGGCATTTTCCATGGAAACAGGTACCATTTTACGTGGCAGCTCAATTGATAGGAGCCAGTTCTGCTTCTTTTACGCTGCGACTGCTGTTAGACCCAATAAGAGAGCTCGGTACAACCACACCTTCTGGAACAGATATTCAAGCTCTAATCATGGAGATCGTGGCAACGTTCACCATGATGTTCGTCGCCTCTGCTGTGGCTACTGACGCAAAAGCTATAGGAGAGCTGGCAGGAGTTGCGGTAGGCTCTTCAGTATGCATAGCAGGCATCCTTGCAGGACCAATATCGGGGGGATCAATGAATCCAGCAAGGACATTAGGTCCTGCAATTGCAAGTGGATCCTATAAGGGAATTTGGGTCTATCTGGTTGGACCAGTTATAGGGGCACTTTTAGGGGCATGGTCTTACAGTACTATTCAGGAGACAGATAAGTCAGCTTCCGCCACTTCAGTTCCACTCAAGCTATGCTTGATAAATAGGGAAACTGAGCAAGTTAGAAACAAAAACAATCCACAAGATCTGGGTAACAGCAATGTTTAA 882 0.4637 MQTTTQDICDLITEGDHLQNPRTQNQASFLSFAKLAEYYPPGFPRKVLAETIGTYLLVFVASGSSALNAIDEQEISKLGASLAGGFIVTVMIYSIGHISGAHMNPAVSLAFAALRHFPWKQVPFYVAAQLIGASSASFTLRLLLDPIRELGTTTPSGTDIQALIMEIVATFTMMFVASAVATDAKAIGELAGVAVGSSVCIAGILAGPISGGSMNPARTLGPAIASGSYKGIWVYLVGPVIGALLGAWSYSTIQETDKSASATSVPLKLCLINRETEQVRNKNNPQDLGNSNV 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere02g2077 293 Pfam Major intrinsic protein 43 250 IPR000425 GO:0015267|GO:0016020|GO:0055085
Dere02g2077 293 ProSitePatterns MIP family signature. 102 110 IPR022357 -
Dere02g2077 293 Gene3D Glycerol uptake facilitator protein. 12 264 IPR023271 -
Dere02g2077 293 PRINTS Major intrinsic protein family signature 45 64 IPR000425 GO:0015267|GO:0016020|GO:0055085
Dere02g2077 293 PRINTS Major intrinsic protein family signature 165 183 IPR000425 GO:0015267|GO:0016020|GO:0055085
Dere02g2077 293 PRINTS Major intrinsic protein family signature 233 253 IPR000425 GO:0015267|GO:0016020|GO:0055085
Dere02g2077 293 PRINTS Major intrinsic protein family signature 84 108 IPR000425 GO:0015267|GO:0016020|GO:0055085
Dere02g2077 293 PRINTS Major intrinsic protein family signature 196 218 IPR000425 GO:0015267|GO:0016020|GO:0055085
Dere02g2077 293 PRINTS Major intrinsic protein family signature 121 140 IPR000425 GO:0015267|GO:0016020|GO:0055085
Dere02g2077 293 CDD MIP 45 250 IPR000425 GO:0015267|GO:0016020|GO:0055085
Dere02g2077 293 PANTHER AQUAPORIN NIP2-1 37 264 IPR034294 -
Dere02g2077 293 SUPERFAMILY Aquaporin-like 37 256 IPR023271 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere02g2077 Dere-ChrDere02 21321817 21323987 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere02g2077 45 258 Major Intrinsic Protein MIP AT5G37820 52.315 9.33e-73 224