Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere02g2073 ATGCCGCAACGCCCGAGGCCATTTCGGTCCGACCACATCAAAAGCAAAGTGCACCCCCTAGTTCTACGGTACCGTTTCAGCCTTTCAGGACGTGTTTCTTTTGTCGGGGCTTACTGGGCAGTTGCTCTAAGCGGCGTCGTTTCCCTTCCTCCTGTTTTTTTTTTTATAGGTTGTCCGGGATTTCTCGCATGCCATTGCCGACAAAGATACCTTGGATGCACTGGTGTCCGAAACGTTTCGCCCCGGATTTGTTTGATGCACGCACTTTGTTTTGTCCTTATTTACGTATTTGCCACTGCCTTTAGGCTTCTGGAAAAGGGATTTATTTTTGTTGCGACCCTAGATGTTAGAGCCATGGACATAACCCCCACCGCCACCAATACTCCTAGTAGTACAAAATCCCCGGATCATGACACCGAAACACCGACCCGGATCCAAACCGCCGCCAAGCCCTTATCCTTCTCCAACGGCGTGCTCAAGCGCCACCACCACCGCCTCTGCAGCCAGCCCGTGGCTGTCACCTACAAGGAATGCTTGAAAAACCATGCAGCCAGCTTGGGAGGCCACGCCCTGGACGGTTGCTGCGAGTTCATGGCCTCTCCCAGCGCCAACTCCGCCGACCCAAGCTCCATCAAATGCGCCGCCTGTGGCTGCCACCGTAATTTCCACCGCCGTGAGCCCGAAGAGCCTATTTCCACAACCCATGTCATCGAGTTCCAGCCCCACCATCGTCACCACCCCCCACCGCCTCCACCCTTTCAAGCTTCCAATCGGAGCCCAAATTCGGCGTCCCCACCCCCGATCTCCTCCTCTTACTACCCCTCTGCACCCCACATGCTTCTGGCTCTCTCCGCTGCCGGGATATCAGTTCCTCCGGAGAGCGCGGCTGCTCCGATGAACGCTCTGGCAACGCCAAGCCCGAATGCCAGGAAGCGGTTCAGGACAAAGTTCACTCAGGATCAGAAGGAAAAGATGTACCAGTTCGCGGAGAGGGTGGGGTGGAAGATGCAGAAGCGGGACGAAGAATTGGTGCAAGAGTTCTGCAATGAGGTTGGGGTGGAGAGGGGAGTTTTGAAGGTATGGATGCACAACAACAAGAACACTTTTGGGAAGAGAGATGCTATTGTTCATGATGGTAGGAATACTATAGACCAAGACGACCCTAACGCCCTCACCACTGAAATCCACGGCAACAACAACAACAACAACGGCGGCAGCGCGCAGGATCCGAATCATGTTTTTACCAACGATCATAGTGGGGCAAACCTTGGTACTAATGGATCGTCTTCGTCCTCTTGA 1299 0.5427 MPQRPRPFRSDHIKSKVHPLVLRYRFSLSGRVSFVGAYWAVALSGVVSLPPVFFFIGCPGFLACHCRQRYLGCTGVRNVSPRICLMHALCFVLIYVFATAFRLLEKGFIFVATLDVRAMDITPTATNTPSSTKSPDHDTETPTRIQTAAKPLSFSNGVLKRHHHRLCSQPVAVTYKECLKNHAASLGGHALDGCCEFMASPSANSADPSSIKCAACGCHRNFHRREPEEPISTTHVIEFQPHHRHHPPPPPPFQASNRSPNSASPPPISSSYYPSAPHMLLALSAAGISVPPESAAAPMNALATPSPNARKRFRTKFTQDQKEKMYQFAERVGWKMQKRDEELVQEFCNEVGVERGVLKVWMHNNKNTFGKRDAIVHDGRNTIDQDDPNALTTEIHGNNNNNNGGSAQDPNHVFTNDHSGANLGTNGSSSSS 432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere02g2073 432 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 175 226 IPR006456 -
Dere02g2073 432 FunFam Zinc-finger homeodomain protein 2 298 371 - -
Dere02g2073 432 SUPERFAMILY Homeodomain-like 304 371 IPR009057 -
Dere02g2073 432 Gene3D - 300 370 - -
Dere02g2073 432 MobiDBLite consensus disorder prediction 240 270 - -
Dere02g2073 432 MobiDBLite consensus disorder prediction 379 432 - -
Dere02g2073 432 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 174 226 IPR006456 -
Dere02g2073 432 MobiDBLite consensus disorder prediction 385 432 - -
Dere02g2073 432 NCBIfam homeobox domain, ZF-HD class 310 367 IPR006455 -
Dere02g2073 432 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 151 368 - -
Dere02g2073 432 Pfam ZF-HD protein dimerisation region 173 227 IPR006456 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere02g2073 Dere-ChrDere02 21276866 21278937 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere02g2073 119 366 ZF-HD Transcription Factor Family AT5G15210 55.512 3.70e-75 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Dere02g2073 ZF-HD_dimer 2.2e-27 No_clan