Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere02g2068 ATGGAGGAGAAGAATGAAATGGATAAATCTGATGATATTATGTTGCCCGGTTTTCGGTTTCACCCAACAGACGAGGAGCTTGTTGATTTTTACCTCAAACGAAAAATTCAGCAGAAATCTCTTCCTATTGAGATAATAAAGCAAGTAGACATTTACAAGTACGATCCATGGGATCTTCCAAAGTTTGCAAGTAGTGGTGAGAAAGAGTTGTACTTCTACTGTCAAAGGGATCGAAAGTACAGAAACAGCGCACGCCCAAACCGAGTGACAAGTGCTGGGTTCTGGAAAGCCACTGGAACTGACAGGCCTATATACTCCTCAAATGGCAACTGCATCGGTTTGAAGAAGTCCCTTGTGTTCTACAGAGGCAGAGCCGCCAAAGGCATCAAAACTGACTGGATGATGCACGAGTTTCGCCTTCCTTCTCTTGCTGATTCATCTCTTCCCAAAAAACTCTCTTCCAAGACCCTCCATCCAACTGACTCATGGGCAATTTGTAGGATATTCAAGAAGACCAACTCCATGTCCATGGCACAAAAAGCTTTATCTCATTCCCACCCCTGGATCACTCAGTTTCCAGAAAGCTTGCTTGTAGCTGATATACTCACTCAGGGAGGGGGTGGCAACTGCAATCAGTTCAGCCCAGGAAATCAGTCTTGCACAACAGAGAATATCTGCAGTGCTAATTTCTCAGCTTCAGATATTCCCTCTTATAAACCCATCAACACCCCAGTTCCTGTTTCGTACGGTGATCTAGGTGACAGCTTCATGCTCTCCACACTGGAAGCGTCAAGCTCCATGCTTTTGAACCCAGACTGCGAAGGATTTGAAGGGGAGAACCAGCAGTATAACGGCTTCTCTGTGAGTGTACCTCAGGATATGCAAGGAAACATAAGCAGAGAAATTGGGTTTCCCTTCAGTTTGCCTGATCCAAATGATGCTTGGAAGACTACCCTGCTATGGGACTCAGCCCCTTGTTCAACTGACATGTCCACTAATAGATGCTACACTTAG 1014 0.4527 MEEKNEMDKSDDIMLPGFRFHPTDEELVDFYLKRKIQQKSLPIEIIKQVDIYKYDPWDLPKFASSGEKELYFYCQRDRKYRNSARPNRVTSAGFWKATGTDRPIYSSNGNCIGLKKSLVFYRGRAAKGIKTDWMMHEFRLPSLADSSLPKKLSSKTLHPTDSWAICRIFKKTNSMSMAQKALSHSHPWITQFPESLLVADILTQGGGGNCNQFSPGNQSCTTENICSANFSASDIPSYKPINTPVPVSYGDLGDSFMLSTLEASSSMLLNPDCEGFEGENQQYNGFSVSVPQDMQGNISREIGFPFSLPDPNDAWKTTLLWDSAPCSTDMSTNRCYT 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere02g2068 337 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 13 221 - -
Dere02g2068 337 SUPERFAMILY NAC domain 14 171 IPR036093 GO:0003677|GO:0006355
Dere02g2068 337 ProSiteProfiles NAC domain profile. 14 171 IPR003441 GO:0003677|GO:0006355
Dere02g2068 337 FunFam NAC domain-containing protein 35 23 174 - -
Dere02g2068 337 Pfam No apical meristem (NAM) protein 16 140 IPR003441 GO:0003677|GO:0006355
Dere02g2068 337 Gene3D NAC domain 23 176 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere02g2068 Dere-ChrDere02 21217548 21218733 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere02g2068 2 189 NAC Transcription Factor Family AT5G39820 66.832 1.96e-93 280
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Dere02g2068 NAM 4.5e-36 No_clan