Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere02g2058 ATGAGATTTATCTTGCTAGTTGCTACTATGGCCTTCCCTCCTCCTCCTCACAGTTTCATGTTTCACACGAATCTCAACCATGAAGATCACCATCATGACCACCACCTCTCCTCACCATCTCTCAAACCCTTCCCTCCATTACCTCCCCAACACTTTCAAACTCGCGGTGCACCCTTCATGGTGAAGCGATCGATGTCGTTTTCAGGGATAGAGAACAAGTGCGATATGGAAGCAAATGGAGATGATGATTTGTCGGATGATGGGTCGGTGCCGATGGGGGAGAAGAAGAAGAGGCTGAACATGGAGCAGGTGAAGGCACTTGAGAAGAGCTTTGAGGTGGGGAACAAGCTGGAGCCGGAGAGGAAACTGGAGCTGGCTAAGGCTTTGGGTCTGCAGCCACGTCAGATCGCCATTTGGTTTCAGAACAGGAGAGCCAGATGGAAGACCAAGAACCTCGAGAAAGATTATGAATCCCTCAAGAAACAGTTTGAAGCTCTCAAAGCTGACAACGATGCCCTTAAACTTCAGAACCAGAAACTTCGCGCAGAGTTACAAGCTCTGAAAGGAAGAGATAACTGTGAAGGCGTAACAGTGAGCCTCATAAAGAAAGAAACTGAGGGTTCTTGGAGCAATAACGGAAGTGACAATAGCTCAGACATCAATTTGGACCTTTCATCAAGAACACCAGTTATCAACAGTCCAGTTTGTTCTCAGAATGGCAAAGGCCAGCTTGTAGCCTCTTCCCTAAAGCCCACCAGCATAACCCAACTCCTCCAGTTCTCAACAAGATCAGACCTCCAAGATGAAACCTTCTCCAACATGTTCAACGCCAATACTATTGATGATCAGCAGCAGAACTTTTGGACCTGGCCCGAGCAGCACCATTTTCACTGA 894 0.4765 MRFILLVATMAFPPPPHSFMFHTNLNHEDHHHDHHLSSPSLKPFPPLPPQHFQTRGAPFMVKRSMSFSGIENKCDMEANGDDDLSDDGSVPMGEKKKRLNMEQVKALEKSFEVGNKLEPERKLELAKALGLQPRQIAIWFQNRRARWKTKNLEKDYESLKKQFEALKADNDALKLQNQKLRAELQALKGRDNCEGVTVSLIKKETEGSWSNNGSDNSSDINLDLSSRTPVINSPVCSQNGKGQLVASSLKPTSITQLLQFSTRSDLQDETFSNMFNANTIDDQQQNFWTWPEQHHFH 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere02g2058 297 Pfam Homeobox associated leucine zipper 150 189 IPR003106 GO:0006355|GO:0043565
Dere02g2058 297 PRINTS Lambda-repressor HTH signature 130 146 IPR000047 GO:0003677
Dere02g2058 297 PRINTS Lambda-repressor HTH signature 121 130 IPR000047 GO:0003677
Dere02g2058 297 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 66 274 IPR045224 GO:0003700
Dere02g2058 297 SMART HOX_1 93 154 IPR001356 GO:0003677
Dere02g2058 297 ProSitePatterns 'Homeobox' domain signature. 125 148 IPR017970 GO:0000981|GO:0006355
Dere02g2058 297 Gene3D - 89 158 - -
Dere02g2058 297 Coils Coil 142 190 - -
Dere02g2058 297 ProSiteProfiles 'Homeobox' domain profile. 90 150 IPR001356 GO:0003677
Dere02g2058 297 FunFam Homeobox-leucine zipper protein ATHB-13 86 154 - -
Dere02g2058 297 CDD homeodomain 95 151 IPR001356 GO:0003677
Dere02g2058 297 Pfam Homeodomain 95 148 IPR001356 GO:0003677
Dere02g2058 297 SUPERFAMILY Homeodomain-like 87 152 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere02g2058 Dere-ChrDere02 21123515 21125385 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere02g2058 6 292 Homeobox Transcription Factor Family AT5G15150 48.113 6.85e-74 228
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Dere02g2058 Homeodomain 1e-15 CL0123