Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere02g2052 ATGTGGGGTGCAGCGACGGACGAGAAACGAGTGTACACAAACATTGCTAATAGTCAGAACAAGAATTTCACCCTCAAACCATCCCACAACACCACGATCACCGGCGGGTGGTGGCCATGGAACCTCGCAGTGGCAGTGTGTTATGGATCACTGCCAATCCTAATGATGCCACTGCTCCTGCTCCTGTTACCGTGGCCAACGGTGTCGTTTTTGCTGGTCCAACCTACCGCCAGGGACCCATATATGCAATGGATGCTAAGACGGGCAAAATACTGTGGTCCAACACACCGGAGCCACCATATATGGAGGCGTTTCAGTGAGCCAGGGCTGTGTTTGCGTTGGCAACGTCGCTTGCCGGCAGACCCCTTAATTAGTTTTGCTTCGTCTTGTTCGGTCTCGCCTCTGTTCTGCACGCGCAGCTCCGAAACCCAAAACCCTGAAATGGGTTATGTGAGTAGAGCTTCGAAGACCCTACGGCAATCTAAGTACTTGTCCCTGTTGTTTAATTACTCCCCATTGTCCTCTATTTATGGAGGCAAATCACTAAACAGTACACTAACTTCTCGTCGCTTTGCCCTGAGCCGTGCATCGTTCTGTTCTCAACCACGCCAAAACAGCAAAGAAAAAAATCGTATAGATTTGAGTCAATATCCTCCTGAGCTAATTAGGAACTTCTCTATAATTGCTCATATAGATCATGGCAAGTCCACTCTTGCTGATCGGCTGCTAGAGCTCACTGGGACTATCAAGAAGGGACATGGCCAGCCTCAGTATCTTGACAAGTTGCAGGTAGAACGAGAAAGGGGTATCACTGTTAAAGCCCAGACAGCAACAATGTTCTACAAGCACAGCATTCACGATGCTACCTATAGTGATGGCCAAGATCCACCTAACTTTCTGCTAAATCTTATTGACACTCCCGGGCATGTGGATTTTAGTTATGAAGTGTCGAGGTCACTGGCCGCTTGTCAGGGTGCTCTTTTAGTTGTCGATGCTGCTCAAGGAGTCCAAGCGCAAACTGTTGCTAATTTTTATCTTGCCTTTGAATCCAACCTAACAATTATACCTGTCATAAACAAGATAGACCAGCCAACTGCTGATCCTGATGGTGTTAAAGCGCAACTAAAATCAATGTTTGATCTTGACCCAAGTGATGCACTTTTAACATCTGCTAAAACAGGACAGGGTCTTGAGCAAGTCCTTCCTGCTGTCATACAGCGCATACCTCCCCCTCCTGGGAAGAGCGGTTCTCCTCTACGCATGCTTTTGCTAGATTCTTATTATGATGAATACAAAGGGGTAATATGCCACGTTGCTGTTGTTGATGGTGCCCTGCGCAAGGGGGATAAAATTTCATCTGCAGCAACTGGACAATCTTATGAAGCTTTGGATGTAGGCATCATGCATCCTGAACTCACCCCTACTGGAATCCTGCTTCCTGGGCAAGTGGGTTATGTTGTAAGTGGCATGCGCTCAACCAAAGAGGCGCGTGTTGGAGATACACTTTTCCATACTCGAAGCACTATAGAGCCCCTTCCTGGCTTCAAGCCAGCAAAACATATGGTATTCTCGGGCCTTTATCCAGCGGATGGATCTGATTTTGAAGCACTCAACCATGCAATAGAGAGACTGACATGTAATGATGCCAGCGTCTCTATTACCAAAGAAAGTAGCACAGCTCTAGGTCTGGGGTTCAGGTGCGGTTTCCTTGGCTTACTACACATGGATGTTTTTCATCAGCGGCTCGAACAGGAATATGGAGCTCATGTTATCTCAACTGTACCTACCGTGCCATATATATTTGAGTATTCTGATGGAAGCAAATTGCAAGTTGAGAATCCAGCTGCATTACCTTCTAATCCCAAGCAACGAGTGATAGCCTGTTGGGAACCTACAGTGATAGCTACAATTATCATTCCTAGTCAGTATGTGGGATCTGTTATTACCCTTTGCTCTGAGCGAAGAGGCCAGCAATTGGAGTACTCATTCATTGACAGTCAACGGGCATTCATGAAGTATCGCATGCCTTTGAGGGAAATTGTTGTTGACTTTTACAATGAATTGAAGAGTATTACTTCTGGCTATGCTTCATTTGATTATGAGGATGCAGATTATCAACAATCTGATCTGGTGAAACTTGATATTCTCTTGAATGGACAACCAGTTGATGCAATGGCAACCATTGTTCATAACTTGAAAGCATACCGTGTAGGGCGTGAACTGGTGGAGAAACTGAAGAAAGTTATAGACAGGCAAATGTTTGAGATAACCATACAAGCTGCTATTGGGTCAAAGGTTATAGCAAGGGAGACGATTTCTGCAATGAGGAAAAATGTTCTTGCTAAGTGTTATGGCGGTGATGTTACTAGAAAGAGGAAACTATTGGAGAAGCAGAAAGAAGGAAAGAAGCGAATGAAACGTGTTGGTTCAGTTGATATACCACAAGAGGCATTCCATGAGTTATTGAAGGTTTCATAG 2478 0.4532 MWGAATDEKRVYTNIANSQNKNFTLKPSHNTTITGGWWPWNLAVAVCYGSLPILMMPLLLLLLPWPTVSFLLVQPTARDPYMQWMLRRAKYCGPTHRSHHIWRRFSEPGLCLRWQRRLPADPLISFASSCSVSPLFCTRSSETQNPEMGYVSRASKTLRQSKYLSLLFNYSPLSSIYGGKSLNSTLTSRRFALSRASFCSQPRQNSKEKNRIDLSQYPPELIRNFSIIAHIDHGKSTLADRLLELTGTIKKGHGQPQYLDKLQVERERGITVKAQTATMFYKHSIHDATYSDGQDPPNFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANFYLAFESNLTIIPVINKIDQPTADPDGVKAQLKSMFDLDPSDALLTSAKTGQGLEQVLPAVIQRIPPPPGKSGSPLRMLLLDSYYDEYKGVICHVAVVDGALRKGDKISSAATGQSYEALDVGIMHPELTPTGILLPGQVGYVVSGMRSTKEARVGDTLFHTRSTIEPLPGFKPAKHMVFSGLYPADGSDFEALNHAIERLTCNDASVSITKESSTALGLGFRCGFLGLLHMDVFHQRLEQEYGAHVISTVPTVPYIFEYSDGSKLQVENPAALPSNPKQRVIACWEPTVIATIIIPSQYVGSVITLCSERRGQQLEYSFIDSQRAFMKYRMPLREIVVDFYNELKSITSGYASFDYEDADYQQSDLVKLDILLNGQPVDAMATIVHNLKAYRVGRELVEKLKKVIDRQMFEITIQAAIGSKVIARETISAMRKNVLAKCYGGDVTRKRKLLEKQKEGKKRMKRVGSVDIPQEAFHELLKVS 825
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere02g2052 825 Gene3D - 595 708 - -
Dere02g2052 825 NCBIfam small GTP-binding protein domain 225 400 IPR005225 GO:0005525
Dere02g2052 825 CDD EF4_II 419 504 - -
Dere02g2052 825 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 216 449 IPR027417 -
Dere02g2052 825 SUPERFAMILY EF-G C-terminal domain-like 521 598 IPR035647 -
Dere02g2052 825 Gene3D - 220 413 IPR027417 -
Dere02g2052 825 SUPERFAMILY EF-G C-terminal domain-like 629 723 IPR035647 -
Dere02g2052 825 FunFam Translation factor GUF1, mitochondrial 513 594 - -
Dere02g2052 825 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 220 412 IPR000795 GO:0003924|GO:0005525
Dere02g2052 825 Gene3D Elongation Factor G (Translational Gtpase), domain 3 513 594 - -
Dere02g2052 825 CDD EF4_III 520 595 - -
Dere02g2052 825 CDD lepA_C 630 709 IPR035654 -
Dere02g2052 825 Gene3D - 709 783 IPR038363 -
Dere02g2052 825 CDD LepA 223 408 - -
Dere02g2052 825 NCBIfam translation elongation factor 4 221 824 IPR006297 GO:0005525
Dere02g2052 825 PANTHER TRANSLATION FACTOR GUF1-RELATED 195 824 IPR006297 GO:0005525
Dere02g2052 825 FunFam Translation factor GUF1, mitochondrial 709 783 - -
Dere02g2052 825 FunFam Elongation factor 4 219 413 - -
Dere02g2052 825 Hamap Elongation factor 4 [lepA]. 218 825 IPR006297 GO:0005525
Dere02g2052 825 Pfam Elongation factor Tu GTP binding domain 222 409 IPR000795 GO:0003924|GO:0005525
Dere02g2052 825 Gene3D Translation factors 415 512 - -
Dere02g2052 825 Pfam GTP-binding protein LepA C-terminus 717 823 IPR013842 -
Dere02g2052 825 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 260 275 IPR031157 -
Dere02g2052 825 Pfam Elongation factor G C-terminus 630 715 IPR000640 -
Dere02g2052 825 PRINTS GTP-binding elongation factor signature 318 329 IPR000795 GO:0003924|GO:0005525
Dere02g2052 825 PRINTS GTP-binding elongation factor signature 267 275 IPR000795 GO:0003924|GO:0005525
Dere02g2052 825 PRINTS GTP-binding elongation factor signature 224 237 IPR000795 GO:0003924|GO:0005525
Dere02g2052 825 PRINTS GTP-binding elongation factor signature 354 363 IPR000795 GO:0003924|GO:0005525
Dere02g2052 825 PRINTS GTP-binding elongation factor signature 302 312 IPR000795 GO:0003924|GO:0005525
Dere02g2052 825 FunFam Translation factor GUF1, mitochondrial 595 707 - -
Dere02g2052 825 FunFam Translation factor GUF1, mitochondrial 414 512 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere02g2052 Dere-ChrDere02 21028861 21034360 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere02g2052 222 363 Eukaryotic Initiation Factors Gene Family AT1G56070 40.278 7.94e-25 108