Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Dere02g2052 | ATGTGGGGTGCAGCGACGGACGAGAAACGAGTGTACACAAACATTGCTAATAGTCAGAACAAGAATTTCACCCTCAAACCATCCCACAACACCACGATCACCGGCGGGTGGTGGCCATGGAACCTCGCAGTGGCAGTGTGTTATGGATCACTGCCAATCCTAATGATGCCACTGCTCCTGCTCCTGTTACCGTGGCCAACGGTGTCGTTTTTGCTGGTCCAACCTACCGCCAGGGACCCATATATGCAATGGATGCTAAGACGGGCAAAATACTGTGGTCCAACACACCGGAGCCACCATATATGGAGGCGTTTCAGTGAGCCAGGGCTGTGTTTGCGTTGGCAACGTCGCTTGCCGGCAGACCCCTTAATTAGTTTTGCTTCGTCTTGTTCGGTCTCGCCTCTGTTCTGCACGCGCAGCTCCGAAACCCAAAACCCTGAAATGGGTTATGTGAGTAGAGCTTCGAAGACCCTACGGCAATCTAAGTACTTGTCCCTGTTGTTTAATTACTCCCCATTGTCCTCTATTTATGGAGGCAAATCACTAAACAGTACACTAACTTCTCGTCGCTTTGCCCTGAGCCGTGCATCGTTCTGTTCTCAACCACGCCAAAACAGCAAAGAAAAAAATCGTATAGATTTGAGTCAATATCCTCCTGAGCTAATTAGGAACTTCTCTATAATTGCTCATATAGATCATGGCAAGTCCACTCTTGCTGATCGGCTGCTAGAGCTCACTGGGACTATCAAGAAGGGACATGGCCAGCCTCAGTATCTTGACAAGTTGCAGGTAGAACGAGAAAGGGGTATCACTGTTAAAGCCCAGACAGCAACAATGTTCTACAAGCACAGCATTCACGATGCTACCTATAGTGATGGCCAAGATCCACCTAACTTTCTGCTAAATCTTATTGACACTCCCGGGCATGTGGATTTTAGTTATGAAGTGTCGAGGTCACTGGCCGCTTGTCAGGGTGCTCTTTTAGTTGTCGATGCTGCTCAAGGAGTCCAAGCGCAAACTGTTGCTAATTTTTATCTTGCCTTTGAATCCAACCTAACAATTATACCTGTCATAAACAAGATAGACCAGCCAACTGCTGATCCTGATGGTGTTAAAGCGCAACTAAAATCAATGTTTGATCTTGACCCAAGTGATGCACTTTTAACATCTGCTAAAACAGGACAGGGTCTTGAGCAAGTCCTTCCTGCTGTCATACAGCGCATACCTCCCCCTCCTGGGAAGAGCGGTTCTCCTCTACGCATGCTTTTGCTAGATTCTTATTATGATGAATACAAAGGGGTAATATGCCACGTTGCTGTTGTTGATGGTGCCCTGCGCAAGGGGGATAAAATTTCATCTGCAGCAACTGGACAATCTTATGAAGCTTTGGATGTAGGCATCATGCATCCTGAACTCACCCCTACTGGAATCCTGCTTCCTGGGCAAGTGGGTTATGTTGTAAGTGGCATGCGCTCAACCAAAGAGGCGCGTGTTGGAGATACACTTTTCCATACTCGAAGCACTATAGAGCCCCTTCCTGGCTTCAAGCCAGCAAAACATATGGTATTCTCGGGCCTTTATCCAGCGGATGGATCTGATTTTGAAGCACTCAACCATGCAATAGAGAGACTGACATGTAATGATGCCAGCGTCTCTATTACCAAAGAAAGTAGCACAGCTCTAGGTCTGGGGTTCAGGTGCGGTTTCCTTGGCTTACTACACATGGATGTTTTTCATCAGCGGCTCGAACAGGAATATGGAGCTCATGTTATCTCAACTGTACCTACCGTGCCATATATATTTGAGTATTCTGATGGAAGCAAATTGCAAGTTGAGAATCCAGCTGCATTACCTTCTAATCCCAAGCAACGAGTGATAGCCTGTTGGGAACCTACAGTGATAGCTACAATTATCATTCCTAGTCAGTATGTGGGATCTGTTATTACCCTTTGCTCTGAGCGAAGAGGCCAGCAATTGGAGTACTCATTCATTGACAGTCAACGGGCATTCATGAAGTATCGCATGCCTTTGAGGGAAATTGTTGTTGACTTTTACAATGAATTGAAGAGTATTACTTCTGGCTATGCTTCATTTGATTATGAGGATGCAGATTATCAACAATCTGATCTGGTGAAACTTGATATTCTCTTGAATGGACAACCAGTTGATGCAATGGCAACCATTGTTCATAACTTGAAAGCATACCGTGTAGGGCGTGAACTGGTGGAGAAACTGAAGAAAGTTATAGACAGGCAAATGTTTGAGATAACCATACAAGCTGCTATTGGGTCAAAGGTTATAGCAAGGGAGACGATTTCTGCAATGAGGAAAAATGTTCTTGCTAAGTGTTATGGCGGTGATGTTACTAGAAAGAGGAAACTATTGGAGAAGCAGAAAGAAGGAAAGAAGCGAATGAAACGTGTTGGTTCAGTTGATATACCACAAGAGGCATTCCATGAGTTATTGAAGGTTTCATAG | 2478 | 0.4532 | MWGAATDEKRVYTNIANSQNKNFTLKPSHNTTITGGWWPWNLAVAVCYGSLPILMMPLLLLLLPWPTVSFLLVQPTARDPYMQWMLRRAKYCGPTHRSHHIWRRFSEPGLCLRWQRRLPADPLISFASSCSVSPLFCTRSSETQNPEMGYVSRASKTLRQSKYLSLLFNYSPLSSIYGGKSLNSTLTSRRFALSRASFCSQPRQNSKEKNRIDLSQYPPELIRNFSIIAHIDHGKSTLADRLLELTGTIKKGHGQPQYLDKLQVERERGITVKAQTATMFYKHSIHDATYSDGQDPPNFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANFYLAFESNLTIIPVINKIDQPTADPDGVKAQLKSMFDLDPSDALLTSAKTGQGLEQVLPAVIQRIPPPPGKSGSPLRMLLLDSYYDEYKGVICHVAVVDGALRKGDKISSAATGQSYEALDVGIMHPELTPTGILLPGQVGYVVSGMRSTKEARVGDTLFHTRSTIEPLPGFKPAKHMVFSGLYPADGSDFEALNHAIERLTCNDASVSITKESSTALGLGFRCGFLGLLHMDVFHQRLEQEYGAHVISTVPTVPYIFEYSDGSKLQVENPAALPSNPKQRVIACWEPTVIATIIIPSQYVGSVITLCSERRGQQLEYSFIDSQRAFMKYRMPLREIVVDFYNELKSITSGYASFDYEDADYQQSDLVKLDILLNGQPVDAMATIVHNLKAYRVGRELVEKLKKVIDRQMFEITIQAAIGSKVIARETISAMRKNVLAKCYGGDVTRKRKLLEKQKEGKKRMKRVGSVDIPQEAFHELLKVS | 825 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Dere02g2052 | 825 | Gene3D | - | 595 | 708 | - | - | |
Dere02g2052 | 825 | NCBIfam | small GTP-binding protein domain | 225 | 400 | IPR005225 | GO:0005525 | |
Dere02g2052 | 825 | CDD | EF4_II | 419 | 504 | - | - | |
Dere02g2052 | 825 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 216 | 449 | IPR027417 | - | |
Dere02g2052 | 825 | SUPERFAMILY | EF-G C-terminal domain-like | 521 | 598 | IPR035647 | - | |
Dere02g2052 | 825 | Gene3D | - | 220 | 413 | IPR027417 | - | |
Dere02g2052 | 825 | SUPERFAMILY | EF-G C-terminal domain-like | 629 | 723 | IPR035647 | - | |
Dere02g2052 | 825 | FunFam | Translation factor GUF1, mitochondrial | 513 | 594 | - | - | |
Dere02g2052 | 825 | ProSiteProfiles | Translational (tr)-type guanine nucleotide-binding (G) domain profile. | 220 | 412 | IPR000795 | GO:0003924|GO:0005525 | |
Dere02g2052 | 825 | Gene3D | Elongation Factor G (Translational Gtpase), domain 3 | 513 | 594 | - | - | |
Dere02g2052 | 825 | CDD | EF4_III | 520 | 595 | - | - | |
Dere02g2052 | 825 | CDD | lepA_C | 630 | 709 | IPR035654 | - | |
Dere02g2052 | 825 | Gene3D | - | 709 | 783 | IPR038363 | - | |
Dere02g2052 | 825 | CDD | LepA | 223 | 408 | - | - | |
Dere02g2052 | 825 | NCBIfam | translation elongation factor 4 | 221 | 824 | IPR006297 | GO:0005525 | |
Dere02g2052 | 825 | PANTHER | TRANSLATION FACTOR GUF1-RELATED | 195 | 824 | IPR006297 | GO:0005525 | |
Dere02g2052 | 825 | FunFam | Translation factor GUF1, mitochondrial | 709 | 783 | - | - | |
Dere02g2052 | 825 | FunFam | Elongation factor 4 | 219 | 413 | - | - | |
Dere02g2052 | 825 | Hamap | Elongation factor 4 [lepA]. | 218 | 825 | IPR006297 | GO:0005525 | |
Dere02g2052 | 825 | Pfam | Elongation factor Tu GTP binding domain | 222 | 409 | IPR000795 | GO:0003924|GO:0005525 | |
Dere02g2052 | 825 | Gene3D | Translation factors | 415 | 512 | - | - | |
Dere02g2052 | 825 | Pfam | GTP-binding protein LepA C-terminus | 717 | 823 | IPR013842 | - | |
Dere02g2052 | 825 | ProSitePatterns | Translational (tr)-type guanine nucleotide-binding (G) domain signature. | 260 | 275 | IPR031157 | - | |
Dere02g2052 | 825 | Pfam | Elongation factor G C-terminus | 630 | 715 | IPR000640 | - | |
Dere02g2052 | 825 | PRINTS | GTP-binding elongation factor signature | 318 | 329 | IPR000795 | GO:0003924|GO:0005525 | |
Dere02g2052 | 825 | PRINTS | GTP-binding elongation factor signature | 267 | 275 | IPR000795 | GO:0003924|GO:0005525 | |
Dere02g2052 | 825 | PRINTS | GTP-binding elongation factor signature | 224 | 237 | IPR000795 | GO:0003924|GO:0005525 | |
Dere02g2052 | 825 | PRINTS | GTP-binding elongation factor signature | 354 | 363 | IPR000795 | GO:0003924|GO:0005525 | |
Dere02g2052 | 825 | PRINTS | GTP-binding elongation factor signature | 302 | 312 | IPR000795 | GO:0003924|GO:0005525 | |
Dere02g2052 | 825 | FunFam | Translation factor GUF1, mitochondrial | 595 | 707 | - | - | |
Dere02g2052 | 825 | FunFam | Translation factor GUF1, mitochondrial | 414 | 512 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Dere02g2052 | Dere-ChrDere02 | 21028861 | 21034360 | Proximal |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Dere02g2052 | 222 | 363 | Eukaryotic Initiation Factors Gene Family | AT1G56070 | 40.278 | 7.94e-25 | 108 |