Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere02g2046 ATGGAAATGATGATAAAGAATGAAGAGAGCATGGGAAGAAGCAGGATGTGCATGGAAGAAGGTAAGTTCCAAGGAACTCGCTGTGTCAAGAGACGAAGAAGAGAACCTGTGGTAGCTGCGCTTAAATCTGATGACAATCAAATTAAGAAGCAGCAACAAGTTAATCAAAATCCTGCTACCAACACTGCGAAGAGAAGTTCAAGATTCCGTGGTGTCAGCAGACACAGATGGACTGGTCGGTTTGAAGCTCACTTGTGGGACAAGCTCTCTTGGAATGTAACACAGAAGAAGAAAGGGAAGCAAGGGGCTTACGATGAAGAAGAATCTGCAGCCAGAGCGTACGATTTAGCTGCACTTAAGTACTGGGGAACATCAACTTTTACCAATTTTCCGATTTCAGATTACAAGAAAGAGATAGAGATAATGGAGACTATGACAAAAGAGGAGTACTTGGCCACTTTAAGAAGAAAGAGCAGTGGTTTTTCAAGAGGCGTGTCAAAGTATAGGGGTGTTGCAAGGCACCACCACAATGGTAGATGGGAAGCAAGGATAGGGAGGGTTTTTGGAAACAAATATCTCTACCTTGGCACTTACAGCACCCAGGAGGAAGCTGCTCGTGCGTATGACATCGCAGCCGTCGAGTACAGAGGGATTCATGCTGTGACCAACTTTGATTTGAGCACTTACATACGATGGTTAAAGCCTGCAAGAGGAAATATCCAAGAAGCAACACTTGAATCACAAGCAGTACCAGAGGTTTGGACAATGGCATCCCCATCTAACTATACTTCAATAGAGGAGCACAAATCCTTGGCACTTCACAGCAATTCTTTTAATACAGATGACCTGAATTTCACGCAAAAGCAAGATGTCTTTGAAAACAAAACCGCCCTGATCTCAAATAATAAGTCATCTTCACCCACTGCTCTTGGCCTTCTTCTCCGCTCTTCAATATTCAGAGAATTAGTGGAAAAGAATTTGAATTTATCTGGAAATGAAACTGATCTGGAAGACACAAAGGATCAACAACCGCATATAGCTAGTGATGATGAGTTGAGTGGAATATTCTATGACGGGGTGCGCATTGATATTCTAGACAATCCAGTGTCACTGGCGGGGACATGTGGATCAATATTTGTGAAGTTCCACGAGACTTACCAATTTCCACCATTAGCATAG 1179 0.43 MEMMIKNEESMGRSRMCMEEGKFQGTRCVKRRRREPVVAALKSDDNQIKKQQQVNQNPATNTAKRSSRFRGVSRHRWTGRFEAHLWDKLSWNVTQKKKGKQGAYDEEESAARAYDLAALKYWGTSTFTNFPISDYKKEIEIMETMTKEEYLATLRRKSSGFSRGVSKYRGVARHHHNGRWEARIGRVFGNKYLYLGTYSTQEEAARAYDIAAVEYRGIHAVTNFDLSTYIRWLKPARGNIQEATLESQAVPEVWTMASPSNYTSIEEHKSLALHSNSFNTDDLNFTQKQDVFENKTALISNNKSSSPTALGLLLRSSIFRELVEKNLNLSGNETDLEDTKDQQPHIASDDELSGIFYDGVRIDILDNPVSLAGTCGSIFVKFHETYQFPPLA 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere02g2046 392 CDD AP2 67 133 IPR001471 GO:0003700|GO:0006355
Dere02g2046 392 SUPERFAMILY DNA-binding domain 166 227 IPR016177 GO:0003677
Dere02g2046 392 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 46 258 - -
Dere02g2046 392 FunFam AP2-like ethylene-responsive transcription factor 166 227 - -
Dere02g2046 392 Pfam AP2 domain 67 123 IPR001471 GO:0003700|GO:0006355
Dere02g2046 392 Pfam AP2 domain 166 217 IPR001471 GO:0003700|GO:0006355
Dere02g2046 392 Gene3D AP2/ERF domain 67 133 IPR036955 GO:0003700|GO:0006355
Dere02g2046 392 Gene3D AP2/ERF domain 166 227 IPR036955 GO:0003700|GO:0006355
Dere02g2046 392 MobiDBLite consensus disorder prediction 43 69 - -
Dere02g2046 392 PRINTS Ethylene responsive element binding protein signature 69 80 IPR001471 GO:0003700|GO:0006355
Dere02g2046 392 PRINTS Ethylene responsive element binding protein signature 207 227 IPR001471 GO:0003700|GO:0006355
Dere02g2046 392 CDD AP2 166 227 IPR001471 GO:0003700|GO:0006355
Dere02g2046 392 ProSiteProfiles AP2/ERF domain profile. 68 131 IPR001471 GO:0003700|GO:0006355
Dere02g2046 392 SUPERFAMILY DNA-binding domain 67 133 IPR016177 GO:0003677
Dere02g2046 392 ProSiteProfiles AP2/ERF domain profile. 167 225 IPR001471 GO:0003700|GO:0006355
Dere02g2046 392 MobiDBLite consensus disorder prediction 45 67 - -
Dere02g2046 392 SMART rav1_2 167 231 IPR001471 GO:0003700|GO:0006355
Dere02g2046 392 SMART rav1_2 68 137 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere02g2046 Dere-ChrDere02 20982021 20984185 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere02g2046 63 229 AP2-EREBP Transcription Factor Family AT5G57390 67.059 4.01e-79 248
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Dere02g2046 AP2 2e-09 CL0081