Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere02g2045 ATGTTTCGACATTTTAAGACGGTGATTGGACCTAGTGTCATAACATACGAGGCTGCTCATTCGCGCCACGACCCTGTGGGCGCACTGCGCACCGTTTTGTGCTATATAAATTCCCTTCACAGCGCTCGCGCCTCTGTCCTCGGGGCACTCTCCAGCTCAAAGCTCCCTGCTTTCGACCTTTGCACAAGTTTCTCAGCCATGACGGACGGTCATCTCTTCAACAACATCACTCTTGGGGGCCGTGGAGGCACTAATCCAGGGCAGATGAAAATATATTCTGGAGGGATTTTATGGAAAAGACAAGGAGGTGGCAAAGCAATTGAGGTTGATAAAGCTGACATAATGGGAGTGACATGGATGAAGGTTCCAAGGACTAATCAGCTCGGTGTTCGGATCAAAGATGGGTTGTTCTACAAGTTCACTGGGTTCCGTGACCAGGATGTTGCAAATTTGACCAGTTTCTTCCAAAACACATGTGGGATAACACCCGAAGAGAAGCAGCTTTCTGTTAGTGGGCGTAATTGGGGAGAAGTTGATCTAAATGGAAACATGCTGACTTTTATGGTTGGCTCAAAGCAAGCTTTTGAGGTTTCGTTAGCTGATGTCTCTCAAACACAGCTTCAAGGGAAAAATGATGTGATCTTGGAGTTTCATGTGGATGACACAACTGGAGCTAATGAGAAAGATTCCTTGATGGAGATAAGTTTTCACATACCAAATTCCAACACTCAGTTTGTTGGTGATGAAAATCGTCCTCCTGCTCAGGTTTTCCGTGACAAAATCATGTCTATGGCGGATGTTGGCGCCGGAGGTGAAGATGCTGTTGTTACATTTGAGGGTATTGCTATTCTTACTCCAAGGGGACGATACAGTGTTGAGCTACATCTATCATTCTTGCGGCTTCAAGGGCAGGCCAACGATTTCAAAATCCAGTACAGCAGTGTGGTTCGCCTTTTTTTACTTCCAAAGTCTAATCAGCCACATACCTTTGTCGTTATTAGTCTTGATCCTCCTATTCGTAAAGGACAAACTTTGTACCCACACATTGTAATGCAGTTTGAAACGGACTTTGTAGTTCAAAGTTCCTTGTCAATGAATGAAGATCTTTTCAACAGTAAGTACAAGGACAAGTTGGAGCTTTCATATAAGGGGCTCATCCATGAAGTTTTCACAACAATATTGCGTGGATTATCTGGGGCCAAGGTTACCAAACCAGGAAAATTCAGGAGCTGTCAAGATGGTTATGCAGTGAAATCGTCTTTGAAAGCTGAAGATGGAATTTTATATCCTCTTGAGAAGAGCTTCTTCTTTCTACCAAAACCTCCTACCCTTATTCTTCATGAAGAGATTGACTACGTGGAATTTGAGAGGCATACTGCTGGTGGTTCAAATATGCATTATTTTGACCTTCTTATTAGACTAAAAACTGAGCAAGAGCATCTATTCCGAAATATTCAGAGAAATGAATACCACAATCTGTTTGACTTTATCAGTTCAAAGGGCTTGAAAATTATGAACCTTGGAGGTGTCCAAGCCACTGATGGTGTTGCTGCTGTCCTTCAAGATGACGTTGATGATGCTGTGGATCCACATCTTGAGCGTATAAAGAATGCAGCTGGAGGAGATGAGAGTGATGAAGAGGATGAAGACTTTGTTGCTGATGAGGATGATAGCGGTTCTCCAACTGATGATTCTGGAGAAGACGACTCTGATGTAAGTGAGAGTGGTGATGGAAAAGAGAAGCCTGCCAAGAAGGAATCAAAGAAGGAACTGTCTACTAAGGCGTCTACTTCCAAGAAGAAATCCAAAGATGGAGATGAAGATGGAAAAAAGAAAAAACAGAAGAAGAAAAAGGATCCAAATGCGCCAAAGAGGGCATTGTCTGGTTTTATGTTCTTCTCACAAATGGAGAGAGAGAATCTGAAGAAAAGTAATCCTGGAATTTCATTTACGGATGTGGGAAGAGTACTTGGAGAGAAATGGAAAAAAATGTCCGCGGAGGAGAAGGAACCATATGAAGCCAAAGCTCGTGCAGATAAAAAACGTTACAAGGATGAGATCAGTGGCTACAAGAATCCGCAACCCATGAACGTAGACTCGGGAAATGAATCTGACAGTGCTTAA 2124 0.4303 MFRHFKTVIGPSVITYEAAHSRHDPVGALRTVLCYINSLHSARASVLGALSSSKLPAFDLCTSFSAMTDGHLFNNITLGGRGGTNPGQMKIYSGGILWKRQGGGKAIEVDKADIMGVTWMKVPRTNQLGVRIKDGLFYKFTGFRDQDVANLTSFFQNTCGITPEEKQLSVSGRNWGEVDLNGNMLTFMVGSKQAFEVSLADVSQTQLQGKNDVILEFHVDDTTGANEKDSLMEISFHIPNSNTQFVGDENRPPAQVFRDKIMSMADVGAGGEDAVVTFEGIAILTPRGRYSVELHLSFLRLQGQANDFKIQYSSVVRLFLLPKSNQPHTFVVISLDPPIRKGQTLYPHIVMQFETDFVVQSSLSMNEDLFNSKYKDKLELSYKGLIHEVFTTILRGLSGAKVTKPGKFRSCQDGYAVKSSLKAEDGILYPLEKSFFFLPKPPTLILHEEIDYVEFERHTAGGSNMHYFDLLIRLKTEQEHLFRNIQRNEYHNLFDFISSKGLKIMNLGGVQATDGVAAVLQDDVDDAVDPHLERIKNAAGGDESDEEDEDFVADEDDSGSPTDDSGEDDSDVSESGDGKEKPAKKESKKELSTKASTSKKKSKDGDEDGKKKKQKKKKDPNAPKRALSGFMFFSQMERENLKKSNPGISFTDVGRVLGEKWKKMSAEEKEPYEAKARADKKRYKDEISGYKNPQPMNVDSGNESDSA 707
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere02g2045 707 MobiDBLite consensus disorder prediction 664 707 - -
Dere02g2045 707 MobiDBLite consensus disorder prediction 693 707 - -
Dere02g2045 707 Pfam Structure-specific recognition protein (SSRP1) 172 240 IPR024954 -
Dere02g2045 707 Gene3D - 405 513 IPR011993 -
Dere02g2045 707 Gene3D - 65 158 IPR011993 -
Dere02g2045 707 SMART Rtt106_2 414 507 IPR013719 -
Dere02g2045 707 FunFam FACT complex subunit SSRP1 405 514 - -
Dere02g2045 707 CDD PH2_SSRP1-like 408 507 - -
Dere02g2045 707 Gene3D - 162 245 IPR038167 -
Dere02g2045 707 MobiDBLite consensus disorder prediction 535 630 - -
Dere02g2045 707 FunFam FACT complex subunit SSRP1 67 159 - -
Dere02g2045 707 Gene3D - 265 404 - -
Dere02g2045 707 MobiDBLite consensus disorder prediction 572 614 - -
Dere02g2045 707 FunFam FACT complex subunit SSRP1 162 245 - -
Dere02g2045 707 CDD HMG-box_AtSSRP1 619 694 - -
Dere02g2045 707 SMART hmgende2 622 692 IPR009071 -
Dere02g2045 707 Gene3D High mobility group box domain 606 701 IPR036910 -
Dere02g2045 707 Pfam POB3-like N-terminal PH domain 73 164 IPR035417 -
Dere02g2045 707 MobiDBLite consensus disorder prediction 542 571 - -
Dere02g2045 707 SUPERFAMILY PH domain-like 272 506 - -
Dere02g2045 707 Pfam HMG (high mobility group) box 623 691 IPR009071 -
Dere02g2045 707 FunFam FACT complex subunit SSRP1 606 700 - -
Dere02g2045 707 CDD PH1_SSRP1-like 273 406 - -
Dere02g2045 707 FunFam Fact complex subunit ssrp1 265 404 - -
Dere02g2045 707 Pfam Histone chaperone Rttp106-like 416 505 IPR013719 -
Dere02g2045 707 PANTHER FACT COMPLEX SUBUNIT SSRP1 67 676 - -
Dere02g2045 707 PRINTS Structure-specific recognition protein signature 466 482 IPR000969 GO:0003677|GO:0005634
Dere02g2045 707 PRINTS Structure-specific recognition protein signature 482 500 IPR000969 GO:0003677|GO:0005634
Dere02g2045 707 PRINTS Structure-specific recognition protein signature 285 301 IPR000969 GO:0003677|GO:0005634
Dere02g2045 707 PRINTS Structure-specific recognition protein signature 440 457 IPR000969 GO:0003677|GO:0005634
Dere02g2045 707 PRINTS Structure-specific recognition protein signature 395 408 IPR000969 GO:0003677|GO:0005634
Dere02g2045 707 PRINTS Structure-specific recognition protein signature 422 440 IPR000969 GO:0003677|GO:0005634
Dere02g2045 707 PRINTS Structure-specific recognition protein signature 307 323 IPR000969 GO:0003677|GO:0005634
Dere02g2045 707 PRINTS Structure-specific recognition protein signature 330 346 IPR000969 GO:0003677|GO:0005634
Dere02g2045 707 MobiDBLite consensus disorder prediction 664 688 - -
Dere02g2045 707 SUPERFAMILY HMG-box 610 692 IPR036910 -
Dere02g2045 707 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 623 691 IPR009071 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere02g2045 619 691 ARID Transcription Factor Family AT1G04880 39.726 2.31e-09 58.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Dere02g2045 POB3_N 1.9e-22 CL0266