Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere02g2044 ATGGGAAAATTAATGGAATTAGGAAGTGCAGCTAGAGTTACCTTATTGTTATTGGCTGCCTTGGCAATTACTATTCCATGCCTCGACGCTAACATTGGAGAGTTTGACAACTATCTCCGACAAAAAGCTAAGCAAGCTCGCAGAGCGGCTCTCGAAGCCTACGAGCCCAACCCTTTGAATGTAACATCAGAACTCAACATGCAGGTTCACCTGGCAATGGATAATGCCGACGTTAGCAGAGGGAGGGACCTGGGCGAGAAGAAGAAACACACAGGAGAGTGCATGGCCACCAACCCAATTGACCAATGCTGGAGGTGCGACCAAACATGGGCCACGGATCGCTTTAAGTTAGTAAAATGCGCGATGGGTTTCGGCCGCAAGACCACCGGTGGTTTCGGCGGTAAGATCTACGTGGTGACGAACGATTCCGACGACGATGTCGTAGAACCGAAACCCGGAACTCTGAGGTACGGGGCGATCCAGAAAGAGCCCTTGTGGATCACATTCGACCGCGACATGGTGATCAAGTTGGAACAGGAGTTGATGGTGGCTTCCGACAAGACCATCGACGGTCGTGGAGCCAATGTTCAGATAAAGAACGGCGGTGGCATCACTTTGCAATTCGTGAATAACGTCATCATCCACAATCTTCGCATTCGCAATATCAAAAGTAAGGAGGGGGGAATGATAAGGGACTCCGTGGACCATGTTGGGCTTAGAACCAAAAGTGATGGTGATGCCATCAACCTCTTCGGCGCCACCAACAGGATGCCGAGATGCAGATATGGGTGGTTCCACGTGGTGAACAACGACTACACTCACTGGATAATGTACGCCATCGGAGGAAGCTCGAGCCCAACCATACTCAGCCAAGGAAACCGATACATGGCTCCTAACAATGACGCAGCGAAGCAGGTCACAAATAGATTGGGTGCACCGGAAGCGGAGTGGAGAACTTGGCAATGGCAGACGGAGAATGACGAGTTTGTGAACGGCGCCGTTTTTGTTCCATCGGGAAGTCCTATAACTGCGCTTGGATTCGAGAAAGAGAATTTAATCCCACCCAAACCTGGGATCGAAGCCCCGATACTGGCGCGATTTTCGGGGCAACTCAAGTGCAAGTTGGGCAAGGCTTGTTAG 1140 0.5096 MGKLMELGSAARVTLLLLAALAITIPCLDANIGEFDNYLRQKAKQARRAALEAYEPNPLNVTSELNMQVHLAMDNADVSRGRDLGEKKKHTGECMATNPIDQCWRCDQTWATDRFKLVKCAMGFGRKTTGGFGGKIYVVTNDSDDDVVEPKPGTLRYGAIQKEPLWITFDRDMVIKLEQELMVASDKTIDGRGANVQIKNGGGITLQFVNNVIIHNLRIRNIKSKEGGMIRDSVDHVGLRTKSDGDAINLFGATNRMPRCRYGWFHVVNNDYTHWIMYAIGGSSSPTILSQGNRYMAPNNDAAKQVTNRLGAPEAEWRTWQWQTENDEFVNGAVFVPSGSPITALGFEKENLIPPKPGIEAPILARFSGQLKCKLGKAC 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere02g2044 379 PRINTS Pollen allergen Amb family signature 144 169 IPR018082 -
Dere02g2044 379 PRINTS Pollen allergen Amb family signature 180 196 IPR018082 -
Dere02g2044 379 PRINTS Pollen allergen Amb family signature 120 137 IPR018082 -
Dere02g2044 379 SUPERFAMILY Pectin lyase-like 119 340 IPR011050 -
Dere02g2044 379 PANTHER PECTATE LYASE 18-RELATED 46 255 IPR045032 GO:0030570
Dere02g2044 379 SMART amb_all 172 301 IPR002022 -
Dere02g2044 379 Gene3D - 253 372 IPR012334 -
Dere02g2044 379 Gene3D - 97 252 IPR012334 -
Dere02g2044 379 Pfam Pectate lyase, N terminus 31 82 IPR007524 GO:0030570
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere02g2044 Dere-ChrDere02 20933584 20935127 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere02g2044 7 379 Polysaccharide Lyase AT1G14420 43.421 1.49e-124 365