Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere02g2043 ATGGCTGCCTTGGCCATTACTATTCCATGCCTCGAGGCTAACATCGGAGAATTTGACGACTATCTCCGAGAAAAAGCTAAGCAAGCCCGCAGAGCGGCTCTCGAAGCCTACGAGCCTAACCCTTTGAATATCACTTCAGAGCTCAACATGCACGTTCACCTGGCGATGAATAATGCCAACATCAGCAGAGGGAGGGACTTGCTGGGCGTGAGAAGGAAACACAAGTGCATGGCCACCAACCCAATTGACCAATGCTGGAGGTGCGACCGAAAATGGGCCCAGGATCGCTTTAAGTTAGCCAGATGTGCGATGGGTTTCGGGCGCAAGACTACCGGTGGTTTGGGTGGTAGGATCTACGTGGTGACGGACAATTCCGACGACAATGTGTTAGAACCGAAACCCGGAACTCTGAGGTTCGGGGTGATCCAGAAGGAGCCCTTGTGGATCATATTCGAGCGCAGCATGATGATCAGGTTGACAGAAGAGTTGCTGGTGGGTTCCGACAAGACCATCGACGGTCGTGGAGCCAATGTTCAGATAAAGGGTGGCGCTGGAAGCTCAAGCCCAACCATACTCAGCCAAGGAAACCGATACATGGCTCCTAACAATGACGCAGCGAAGCAGGTCACAAATAGAGTGGCTACACTGGAAGCGGTGTGGAGAACTTGGCAATGGCAGACGGAGAATGACGAGTTTGTGAACGGCGCCTTTTTTGTTCCGTCGGGAAGTCCTATAATTCCGATTGGACTTGAGAGAGAGAATTTGATCCCACCCAGACCTGGGATTCAAGCCCCGATACTGACGCAATTTTCGGGTCAACTCAAGTGCAGGGTGGGCAGGGTTTGTTAG 849 0.523 MAALAITIPCLEANIGEFDDYLREKAKQARRAALEAYEPNPLNITSELNMHVHLAMNNANISRGRDLLGVRRKHKCMATNPIDQCWRCDRKWAQDRFKLARCAMGFGRKTTGGLGGRIYVVTDNSDDNVLEPKPGTLRFGVIQKEPLWIIFERSMMIRLTEELLVGSDKTIDGRGANVQIKGGAGSSSPTILSQGNRYMAPNNDAAKQVTNRVATLEAVWRTWQWQTENDEFVNGAFFVPSGSPIIPIGLERENLIPPRPGIQAPILTQFSGQLKCRVGRVC 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere02g2043 282 PRINTS Pollen allergen Amb family signature 126 151 IPR018082 -
Dere02g2043 282 PRINTS Pollen allergen Amb family signature 102 119 IPR018082 -
Dere02g2043 282 PRINTS Pollen allergen Amb family signature 162 178 IPR018082 -
Dere02g2043 282 SUPERFAMILY Pectin lyase-like 185 244 IPR011050 -
Dere02g2043 282 Pfam Pectate lyase, N terminus 14 63 IPR007524 GO:0030570
Dere02g2043 282 Gene3D - 79 185 IPR012334 -
Dere02g2043 282 Gene3D - 186 275 IPR012334 -
Dere02g2043 282 SUPERFAMILY Pectin lyase-like 80 182 IPR011050 -
Dere02g2043 282 PANTHER PECTATE LYASE 18-RELATED 185 280 IPR045032 GO:0030570
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere02g2043 Dere-ChrDere02 20922264 20923750 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere02g2043 95 282 Polysaccharide Lyase AT1G14420 31.034 3.64e-21 90.9