Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere02g2011 ATGGAGACGCAGATGACGACGATGTGGGCTCAATTGGGCTCCATCACCGCCACACTCATGTTCATATACGCCATGTTCGACAAGTTCTTCCCTCCTCCTCTTCGCGACCATCTTCGAACCTACTCCAACAAGCTCACCTCCCTTGTCTCCCCCTACATCCACATCACCTTCCATGAATTCACCGGCGAACGCCTCAAGCGCAGCGAGGCTTTCACCGCCATCCAAACCTATCTCGGCGAGAATTCTTCCCAGCGTGCCAACAGGCTCAAAGCCGAAGTCGTCAAGGACAGCCAGACCCCCTTGGTGCTTAGCATGGACGACAACGAAGAGATCACCGACGAGTTTCAGGGCGTCAAGCTCTGGTGGGCTTCCAGTAAAATCACCCCCAAAACGCAGTCGTTCTCCTTCTACCCTGCTTCCGATGAGAGGAGGTTCTTGACTCTCACCTTTCACCGGCGCCATCGAGATCTCGTCACTCGCCATTACCTCAGACACGTGTTGGATGAAGGGAAGGCGATTGCTACCAGAAACAGGCAGCTCAAGCTGTACACCAACAATCCAAGCGACAGTTGGCATGGTTACAAAAGCACCAAGTGGAGCCATGTGGTTTTTGAGCACCCTGCGAGTTTTGATACTCTGGCCTTGGACCCTAAGACGAAGGACGACATCATGAAGGACCTTGATAGGTTCAAGAATGCTAAAGATTACTATGCGAAAATCGGCAAGGCTTGGAAGCGTGGGTATTTACTTTACGGTCCTCCGGGAACTGGTAAGTCTACTATGATAGCCGCCATGGCTAATTACTTGAACTACGATGTCTATGATCTTGAACTGACGGCAGTGAAGGAGAACACTGAGCTCAGAAAGCTGTTAATCGAAACTCCCAGTAAGTCGATTATAGTGATCGAAGACATTGATTGCTCTCTTGATCTTACTGGCCAAAGGAAGAAGCCGAAGGAAACTAAGGACGAGGACGAGAAACCCAAAGACCCTATCATGAAAGCTAAAGAAGAGGAAGAGAATAAGAGCAGTAAGGTGACTCTGTCTGGGCTGTTGAATTTTATTGACGGGATTTGGTCATCTTGCGGAGGAGAGAGGATCATTGTGTTCACGACTAATTTTGTGGACAAACTTGATCCTGCTCTTATCAGGAGAGGACGTATGGATAAGCATATTAAGTTGTGGTATTGTTGCTACGAAGCATTCAAGGTGCTTGCTAAGAATTACTTGGATTTTGAAACCCACGATTTGTTTCCTAGAATCGAGGAGTTGTTAAAAGAGATGGAGATGACACCTGCTGATGTTGCTGAGAATCTGATGCCTAAGTCCATAGATGAAGATGCGGAGAGTTGCTTGCAGAGGTTGATTGAAGCTCTTGAGACGGCCAAGGAAGAAGCGAAGAAGAAGGCAGAGGAAGATGCAAAGAAGAAAGCAGAGGAGGAAGAAGCAAAGAAGAAGGCGAAGGAGGAAGAGGCGTAA 1479 0.4834 METQMTTMWAQLGSITATLMFIYAMFDKFFPPPLRDHLRTYSNKLTSLVSPYIHITFHEFTGERLKRSEAFTAIQTYLGENSSQRANRLKAEVVKDSQTPLVLSMDDNEEITDEFQGVKLWWASSKITPKTQSFSFYPASDERRFLTLTFHRRHRDLVTRHYLRHVLDEGKAIATRNRQLKLYTNNPSDSWHGYKSTKWSHVVFEHPASFDTLALDPKTKDDIMKDLDRFKNAKDYYAKIGKAWKRGYLLYGPPGTGKSTMIAAMANYLNYDVYDLELTAVKENTELRKLLIETPSKSIIVIEDIDCSLDLTGQRKKPKETKDEDEKPKDPIMKAKEEEENKSSKVTLSGLLNFIDGIWSSCGGERIIVFTTNFVDKLDPALIRRGRMDKHIKLWYCCYEAFKVLAKNYLDFETHDLFPRIEELLKEMEMTPADVAENLMPKSIDEDAESCLQRLIEALETAKEEAKKKAEEDAKKKAEEEEAKKKAKEEEA 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere02g2011 492 ProSitePatterns AAA-protein family signature. 366 385 IPR003960 GO:0005524|GO:0016887
Dere02g2011 492 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 103 468 IPR027417 -
Dere02g2011 492 SMART AAA_5 244 398 IPR003593 GO:0016887
Dere02g2011 492 MobiDBLite consensus disorder prediction 314 339 - -
Dere02g2011 492 Coils Coil 445 492 - -
Dere02g2011 492 PANTHER BCS1 AAA-TYPE ATPASE 11 467 - -
Dere02g2011 492 Pfam Domain associated at C-terminal with AAA 30 125 IPR025753 -
Dere02g2011 492 Gene3D - 198 391 IPR027417 -
Dere02g2011 492 Pfam ATPase family associated with various cellular activities (AAA) 249 394 IPR003959 GO:0005524|GO:0016887
Dere02g2011 492 MobiDBLite consensus disorder prediction 466 492 - -
Dere02g2011 492 FunFam AAA-ATPase ASD, mitochondrial 200 392 - -
Dere02g2011 492 Gene3D - 392 472 - -
Dere02g2011 492 CDD RecA-like_BCS1 223 394 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere02g2011 Dere-ChrDere02 20411251 20412729 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere02g2011 223 394 Calmodulin-binding Proteins AT3G56690 23.889 1.05e-08 56.2