Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere02g1996 ATGAGTTGGGGTTGGGTTCGTGTGGGAGTGGTTACGAAGAAGAAGAAAAGTGGGTCTATTCGATCCATTTTCATGCACGCCGATGCCCAAGACTGGTTGTTGATGGTTCTAGGTGTGCTTGGGTCTGTAGGTGACGGGTTCACCACCCCCTTGGTGTTGTTCATCAGTAGCCGCTTGATGAACAATATTGGAGGGGCCTCGTCTGGCATGGATGTAACTGCTTTTCTTCATAACATTAATAAGAATGCAGTGGCTCTATTATATCTGGCTTGTGGGTCATTTTTTGCATGCTTCCTCGAGGGTTATTGCTGGACGAGAACAGGCGAGAGACAAGCTGCGAGAATGAGAGCCAGATACTTGAAGGCAGTGCTCAGACAAGAAGTGGCATACTTCGATTTGCATGTCACAAGCACGTCCGAGGTCATCACCAGCGTCTCTAGCGATAGCATCGTGATTCAAGATGTTCTCAGCGAAAAGGTTCCAAATTTGCTGATGAATTTTGCCATGTTCGTTGGGAGTTACGTAGCCGCATTTACAATGTTCTGGAGACTGGCCATTGTGGGGCTTCCTTTCGTGGTTTTTCTAGTAATCCCTGGTTTAATTTACGGAAGGACTTTAATGGGGTTAGCTAACAAGATCAGGGACGAGTATAACGAAGCCGGTAAAATAGCAGAGCAAGCAATATCTTCCATCAGAACTGTCTATTCCTTTGTCGGGGAAACCAAAACCATAGCTGCTTTCTCCTCTGCTTTACAGGGCTCAGTAAAGTTGGGTCTAAAACAAGGCTTAGCTAAAGGCTTAGCCATAGGAAGCAACGGTATTGTCTTCGCCATATGGTCCTTCATGTCCTATTATGGAAGCAGACTCGTCATGTACCATGGCGCTCAAGGAGGGACCGTCTTCGCCGTTGGAGCAGCCATAGCTCTTGGTGGATTAGCACTGGGTGCTGGTTTATCGAACGTGAAGTACTTCTCGGAGGCAAGTGCAGCAGGGGAACGTATAATGGAGGTGATAAGGAGAATTCCGAAGATAGATTCAGAGAACATGGGAGGGGAGATTCTGGAGCGAGTTCGTGGGGAAGTGGAATTCGATCACATAGAATTTGCGTACCCATCGAGGCCGGACTGCATTATCCTGAAGGGTTTCTGTGTGAAGATTCCAGCAGGGAAGACAGTAGCCGTAGTGGGTGGGAGCGGGTCTGGGAAATCCACAGTGATATCACTTTTGCAGAGATTCTATGACCCAATTGGGGGAGAGATACGTGTGGATGGGGTAGCCATTCAGAAGCTGCAGCTCAAGTGGCTGAGGTCGCAGATGGGGCTGGTGAGCCAAGAGCCGGCTCTGTTCGCCACCACCATTAAAGAGAACATACTGTTCGGGAAAGAGGATGCGACGGAGGAGGAGGTTGTGGAGGCTGCCATTGCTTCCAATGCTCATAATTTCATTTCGCAGTTGCCTCTGGGATATGATACCCAGGTGGGCGAGCGAGGCGTTCAAATGTCAGGGGGACAAAAACAGAGGATCGCTATTGCGAGGGCTATTATTAAGAGACCACGAATCCTGCTGCTTGATGAAGCAACAAGTGCACTAGACTCTGAATCCGAACGTGTTGTCCAAGAAGCTCTTGACAAAGCAGCCGTCGGACGCACCACCATTATCATCGCTCACCGCCTATCCACCATTCGGAACGCCGATGTCATCGCCGTCCTCCAAAATGGAACCATCATGGAAATGGGATCGCATGACGAGCTCATCCAAAACGACAACGGGCTTTACGTCTCTCTGGTTCGTCTCCACCAAACAGAGAAATCTAAAACTCAAGACGAAACCCTCATCTCTGCTTCTTCCTCCGTTTCAGACAAAGACATAAACAACACCAGCAGTCGAAGGCTGTCTCTTGTGAGTCGCTCTAACTCTGCCAATTCTATAGCTCCGACTCGAGTTTCACTTGCCGATGAAGAAACCCATGTCGTTATTGAAGAAAAGAAACTCTCTGTTCCGTCGTTCCGGAGGTTGCTTGCCCTGAATCTCCCGGAATGGAAGCAAGCAACTTTAGGGTGTTTTAGTGCGGTTCTCTTCGGTGCGGTTCAGCCATTGTACGCATTCTCAATGGGGTCCATGGTATCCGTGTTTTTTCTGACAGACCACGACGAGATTAAAATGAAGACGAAGGTTTATGCATTTTGTTTTCTGGGGCTGTCTGTGTCCTCATTGCTCATTAATATAAGCCAACATTATAGTTTCGCTTACATGGGAGAGTACTTGACGAAAAGGATCAGAGAGAGAATGCTTTCAAAGATACTCACATTTGAAGTTGGTTGGTTCGATCAGGACGAAAATTCAAGTGGTGCTGTTTGCTCTAGACTGGCTAAAGATGCCAATGTGGTGAGATCTCTAGTGGGAGATAGAATAGCTCTGGTGGTACAAACTTTCTCGGCGGTGATAATAGCATGCACAATGGGCCTAATAATTGCATGGAGGCTCGCCATTCTTATGATAGCCGTTCAACCCGTTATCATCGTCTGCTTCTACACTAGGCGTGTGCTTCTCACGAGCATGTCAAGGAAGGCCACTAAGGCCCAAAATGAATGCAGCAAGCTAGCCGCCGAAGCCGTTTCCAACCTTCGTACCGTCACAGCCTTCTCTTCCCAAGACCGAATACTCAAAATGCTCGAAAAAGCCCAAGAAGGCCCAAGCCGCGAGAGCTTTCGACAGTCATGGTTCGCGGGCATTGGGCTTGCCTGCTCACAAAGCCTCACATCCTGTACTTGGGCTCTAGACTTTTGGTACGGTGGCAAGCTCATCTCCCATGGCTACATCACAGCCAAATCACTGTTTGAGACGTTTATGATACTAGTGAGCACAGGCCGAGTCATTGCAGATGCAGGAAGCATGACCTCGGACCTCGCCAAAGGTGCGGATTCGTTGGGCTCTGTTTTTGCAGTGCTCGACAGGTACACGAAAATCGAACCCGATGACCTAAACGGGTATAAGCCCGACAAGATAACGGGCCTAATAGAACTCCAAGATATACATTTCGCATACCCGGCAAGGCCGAATGCAATGATCTTCCGAGGCTTCTCAATGAGAATCGAAGCAGGGAAATCAACAGCATTGGTGGGGCAGAGTGGGTCTGGGAAATCAACAATCATAGGCTTGATAGAGAGATTCTACGACCCAGTAAAAGGGAGAGTGAGCATAGATGGAAGAGACATAAAGTCGTATCATCTTAGGTCATTGAGAGAACAGATAGCACTGGTAAGCCAAGAGCCGGTGTTACTGGCAGGAAGCATAAAAGAGAACATAGCATATGGAGCATCGGATAAGGTTGACGAGGCAGAGATAGTCGAGGCGGCTAAAGCAGCAAATGCTCATGAATTCATAGCGAGCTTGAGGGAGGGATATGACACGTGGTGTGGGGAGAGAGGAGTGCAACTATCGGGGGGTCAGAAGCAGAGGATAGCGATAGCGAGGGCGATAGTGAAGAACCCAGGAGTGTTACTGCTGGACGAGGCGACGAGTGCACTGGACAGCCAGTCGGAGAGGGTGGTGCAGGATGCGCTGCAGCGGGTGATGGTGAGGAGGACGAGCGTGGTGGTGGCCCACAGGTTGAGCACCATTCAGAAGTGCGATGCGATAGCTGTGTTGGAGAAGGGGAAGGTGGTGGAGAAAGGGACCCACTCATCTTTGTTGGCTAAGGGACCAAGTGGAGCTTATTATTCTCTGGTTAGTCTTCAAAGATGA 3744 0.4912 MSWGWVRVGVVTKKKKSGSIRSIFMHADAQDWLLMVLGVLGSVGDGFTTPLVLFISSRLMNNIGGASSGMDVTAFLHNINKNAVALLYLACGSFFACFLEGYCWTRTGERQAARMRARYLKAVLRQEVAYFDLHVTSTSEVITSVSSDSIVIQDVLSEKVPNLLMNFAMFVGSYVAAFTMFWRLAIVGLPFVVFLVIPGLIYGRTLMGLANKIRDEYNEAGKIAEQAISSIRTVYSFVGETKTIAAFSSALQGSVKLGLKQGLAKGLAIGSNGIVFAIWSFMSYYGSRLVMYHGAQGGTVFAVGAAIALGGLALGAGLSNVKYFSEASAAGERIMEVIRRIPKIDSENMGGEILERVRGEVEFDHIEFAYPSRPDCIILKGFCVKIPAGKTVAVVGGSGSGKSTVISLLQRFYDPIGGEIRVDGVAIQKLQLKWLRSQMGLVSQEPALFATTIKENILFGKEDATEEEVVEAAIASNAHNFISQLPLGYDTQVGERGVQMSGGQKQRIAIARAIIKRPRILLLDEATSALDSESERVVQEALDKAAVGRTTIIIAHRLSTIRNADVIAVLQNGTIMEMGSHDELIQNDNGLYVSLVRLHQTEKSKTQDETLISASSSVSDKDINNTSSRRLSLVSRSNSANSIAPTRVSLADEETHVVIEEKKLSVPSFRRLLALNLPEWKQATLGCFSAVLFGAVQPLYAFSMGSMVSVFFLTDHDEIKMKTKVYAFCFLGLSVSSLLINISQHYSFAYMGEYLTKRIRERMLSKILTFEVGWFDQDENSSGAVCSRLAKDANVVRSLVGDRIALVVQTFSAVIIACTMGLIIAWRLAILMIAVQPVIIVCFYTRRVLLTSMSRKATKAQNECSKLAAEAVSNLRTVTAFSSQDRILKMLEKAQEGPSRESFRQSWFAGIGLACSQSLTSCTWALDFWYGGKLISHGYITAKSLFETFMILVSTGRVIADAGSMTSDLAKGADSLGSVFAVLDRYTKIEPDDLNGYKPDKITGLIELQDIHFAYPARPNAMIFRGFSMRIEAGKSTALVGQSGSGKSTIIGLIERFYDPVKGRVSIDGRDIKSYHLRSLREQIALVSQEPVLLAGSIKENIAYGASDKVDEAEIVEAAKAANAHEFIASLREGYDTWCGERGVQLSGGQKQRIAIARAIVKNPGVLLLDEATSALDSQSERVVQDALQRVMVRRTSVVVAHRLSTIQKCDAIAVLEKGKVVEKGTHSSLLAKGPSGAYYSLVSLQR 1247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere02g1996 1247 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1006 1243 IPR003439 GO:0005524
Dere02g1996 1247 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 361 597 IPR003439 GO:0005524
Dere02g1996 1247 ProSitePatterns ABC transporters family signature. 500 514 IPR017871 GO:0005524|GO:0016887
Dere02g1996 1247 Gene3D - 996 1247 IPR027417 -
Dere02g1996 1247 Pfam ABC transporter 1026 1174 IPR003439 GO:0005524
Dere02g1996 1247 FunFam ABC transporter B family member 4 351 607 - -
Dere02g1996 1247 CDD ABC_MTABC3_MDL1_MDL2 361 598 - -
Dere02g1996 1247 SMART AAA_5 1033 1206 IPR003593 GO:0016887
Dere02g1996 1247 SMART AAA_5 388 574 IPR003593 GO:0016887
Dere02g1996 1247 Gene3D ABC transporter type 1, transmembrane domain 641 994 IPR036640 GO:0005524|GO:0016020
Dere02g1996 1247 Pfam ABC transporter transmembrane region 685 953 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Dere02g1996 1247 Pfam ABC transporter transmembrane region 36 303 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Dere02g1996 1247 SUPERFAMILY ABC transporter transmembrane region 667 990 IPR036640 GO:0005524|GO:0016020
Dere02g1996 1247 Gene3D - 351 600 IPR027417 -
Dere02g1996 1247 FunFam ABC transporter B family member 1 22 358 - -
Dere02g1996 1247 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 353 598 IPR027417 -
Dere02g1996 1247 PANTHER ABC TRANSPORTER B FAMILY 13 709 IPR039421 -
Dere02g1996 1247 CDD ABC_6TM_Pgp_ABCB1_D1_like 35 334 - -
Dere02g1996 1247 ProSitePatterns ABC transporters family signature. 1146 1160 IPR017871 GO:0005524|GO:0016887
Dere02g1996 1247 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 998 1246 IPR027417 -
Dere02g1996 1247 CDD ABC_MTABC3_MDL1_MDL2 1006 1246 - -
Dere02g1996 1247 Pfam ABC transporter 380 528 IPR003439 GO:0005524
Dere02g1996 1247 FunFam ABC transporter B family member 4 996 1247 - -
Dere02g1996 1247 FunFam Putative ABC transporter B family member 8 649 994 - -
Dere02g1996 1247 Coils Coil 850 870 - -
Dere02g1996 1247 CDD ABC_6TM_Pgp_ABCB1_D2_like 673 989 - -
Dere02g1996 1247 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 36 326 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Dere02g1996 1247 Gene3D ABC transporter type 1, transmembrane domain 23 616 IPR036640 GO:0005524|GO:0016020
Dere02g1996 1247 SUPERFAMILY ABC transporter transmembrane region 29 342 IPR036640 GO:0005524|GO:0016020
Dere02g1996 1247 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 685 971 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere02g1996 Dere-ChrDere02 20209878 20216203 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere02g1996 10 1247 Calmodulin-binding Proteins AT2G36910 44.904 0.0 1067