Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere02g1995 ATGATGCTGCTTCAGATCGAGCAGATGGGAATTGGTACCTTGCTTGCTCTTTGTCTGTTGCCACAGATGAAGAGAACAAGGGATGATGCATATGCTTCCTCTCAATTAAAGCGACCCATGGGTTCATCACGAGGGGATTCCTATGGCCAATCTCAAGTCCCTGGAGGAGGGGGAGGGGGAGGGGTAGGTGCTTCACAGAAATTGACTACCAATGATGCTTTATCCTATTTGAAGGAAGTGAAAGACATGTTTCATGACCAAAGAGAAAAATATGACATGTTTCTAGAGGTCATGAAAGATTTCAAGGCTCAAAGGACTGACACTGCTGGTGTCATAGCAAGGGTAAAGGAACTATTTAAAGGGCACAATAACTTGATTTTTGGATTTAACACCTTCTTGCCAAAGGGATATGAGATAACACTTGATGAGGATGAGGCTCCTCCCAAGAAAACAGTTGAATTTGAAGAAGCTATTAGTTTTGTGAATAAGATAAAGAAACGGTTCCAAAATGATGAGCATGTTTACAAATCATTCTTGGACATTTTGAATATGTACCGCAAAGAGCATAAGGATATAGGAGAGGTCTATAATGAGGTAGCTGCCCTTTTTGAGGACCATCCAGATTTGCTTGAGGAGTTTACCAGATTCTTACCTGATACTTCTGCAACACCTTCTACACAGCATACTCCTTATGGTAGAAATTCATTCCAACGTTTCAATGAGCGAAGTTCTACAGCTCCCATGATGCGGCAAATGCAACAACGCTATCGACGGGATAGGCTTAGTTCTCATGATCGCGATCCAAGTGTTGATACTCCTGAACTGGATGATGACAAGGCAATAATTAAAACACATAAGGAGCAGAAGAAGCGTGTTGACAAGGAGAGTAGGGATAGGAAAATTCGTGACCAGGATGAGAGAGAACCTGATCATGATAATAACAGGGTTTTTCCTGATAAAAAGAAATCTGTCAAGAAGGCCGAGGGTTTTGGATTGACTGCTGACTTTGCTTCTTATGATGACAAAGATACCTTAAAGAGCATGTATAACCAAGCATTCAGTTTCTGTGAGAAAGTTAAGGAAAAGTTGGGCAGTTCAGATGACTATCAGGCATTCTTGAAGTGCCTTCATATTTTCAGCAATGGAATAATAAAAAGAAATGATTTGCAAAATTTGGTAACTGATTTACTCGGAAAGTACCCTGATCTTATGGATGAATTCAATGAGTTCTTGGAGCGATGTGAAAATATTGATGGGTTCCTTGCCGGTGTCATAAGTAAAAAGTCATTATGTGGTGATGGTCAGTTATCCAGAACATTTAAGTTGATGGACAAAGACAAAGACCAGAAACGTGAGATTGATGGAGCTAAAGACAAGGAAAGACACCGAGAGAAATACTTGGGAAAATCCATTCAAGAACTTGACCTAAGTAACTGTCAACTTTGTACTCCGAGCTACCGTCTTCTGCCGGAAGATTATCCAATTCCTATGGCCAGTCAGAGGTCTGAGCTTGGTGCTCAAGTATTGAATGATCACTGGGTATCTGTGACTTCTGGAAGTGAGGATTACTCTTTCAAACATATGCGCAGGAATCAGTATGAAGAAAGCTTGTTTAGATGTGAAGATGACAGATTTGAGCTGGACATGTTATTAGAGTCCGTGAGCTCAGCTGCCAAATGTGCAGAGGAGTTGTATAATAGCATTAATGAAAATAAGATTAATATGGAGGCTCCAATCTGTATTGAAGATCACTTTAGCGCTCTAAATTTAAGGTGCATTGAGCGTCTGTATGGTGACCATGGACTTGATGTTATGGACATATTACGAAAAAATCCAACTCATGCTCTTCCTGTGATATTGACTCGTCTGAAGCAGAAACAAGAGGAGTGGAGTAGGTGTCGTTCTGATTTCAATAAGGTTTGGGCTGAAATTTATGCTAAAAACCACTACAAATCACTTGATCATCGTAGCTTCTATTTCAAACAACAAGATTCGAAGAACTTGAGCACAAAATCTTTGGTGGCTGAAATCAAAGAAAATAAAGCAAAGCAGCAGAAAGAATATGATATTCTTCAGGCTATTGCTGCTGGAAATAAGCAGCCTCTAATTCCACATCTAGAGTTTGAATATTCTGACGTTTGGATTCATGAAGACCTATATAAACTTATCCGTTATTCATGTGAAGAGGTCTTCTCAAATAAAGAGATGTCAAATAAAATTATGAGACTTTGGACTACCTTTTTGGAGCTGATGCTTGGTGTTCCCTCTCGTTCTCATGGGACGGAAAATGCAGAGGACAAGAAAACAGGGCAGCGTATTGCTAATTTTGTTGCATCAAATATAGGAGGTGATGGAAACGCTCATGGTGACTGTATACTTATGAATTCTAGGTTACCAAAATCTGATAATAATGAAGCTGATGGTAGAATAACTGAGGTAAAGAATGGTCAGCAGACTATAGTAGCAGCCAATGATAAAGAAAATGGATCTGTTGACTGTGATCATGTTTGTAGAGATGATATTCTAATGGATAAAGGGAAGAACAATGTAGATTCTAGAGAAAAAGTCTCTGGCTTTAGTAAGCAAATTGCCTCTGATGAGCAATCAGCTATTAACAATACACCAATTGCAGTTAGAGGAGAAACTAGCCTGAGCAAAACCAGCTTAGAAATTACTTCAGGCTCTGTACTCAATCCAGCAAGGCCAACTGCTACACTAGGTGATGATGCCAATTCTCAGAGTGGTAATGGACCTTTGATGGAGGGACAGGACATTGCACCTCCACTTCCATTGGCCAATGGAGTGCTAATTGAAAGCAGTAAAGTCAAAAGTCATGATGAATCTGCTGGACCTTGCAAAGTTGAAAAGGAGGAGGGTGAATTATCACCAAATGTTGATTCTGAGGAGGATAATTTTGTTGGTTATGGAGACTCCAGTGGACAGGCACTGCCTAAGGCAAATCATAATATTGATAGAAGAAATTTTGAACCCATAAATGAGGAGGAAGAATGCTGTCCTGAGGCTGGAGGTGATAATGGTGCAGATGCTGATGATGAGGATAGTGATAATGTTTCTGAAGCAGGTGAAGATGCCTCAGGTAGTGAGTCTGCTGGTGATGCATGCTCTCGAGAAGAGCACGAGGAGGAGGAAGATATAGAACGTGATGATGTTGAAGGTAAGGCTGAGAGTGAAGGTGAAGCTGAGGGGATATGTGATGCACAATCCGCTGGAGGAGAGGGCTCATCTTTGCCATTGTCAGAAAGGTTCCTTTTTTCTGTAAAGCCTCTCACAAAGCGTGTCTCCGCAGTTTCACTTGTTGAGGAAAGAAACAATTCCAGGGTCTTCTATGGAAATGATGATTTTTTTGTTCTTTTTAGGCTTCATCAGATTCTTTATGAAAGGATCTTATTAGCAAAAAAATATTCAATGAGTGCTGAAATGAAATGGAAAACCACAAAGGAGGCTTGTTCCCCTGATCCTTATTCAAGATTTATGAATGCACTTTACAATTTGCTTGATGGATCTGCTGACAATGCGAAGTTTGAAGACGAATGCCGAGCAATAATTGGAAACCAATCATATGTCTTATTCACATTGGACAAATTAATATATAAATTGGTCAGACAGCTTCAAACAGTTGCAACGGATGAGATAGACAATAAACTTCTCCAGTTGTATGAGTATGAAAAGTCACGGAAACCTGGGAAATTTATTGATTCAGTATATCATGCCAATGCACGTGTCATCCTTCATGACGAGAATATATATCGTTTGGAATGTACCTCTACTCCCTCTCGACTATTCATCCAGCTGATGGACAATATGAATGAAAAACCTGAGGTGTTTGCCGTTTCAATTGATCCAAATTTTTCCTTTTATCTGTATAATGATTTTCTGTCAGTCTCTCCTGGCAAAAAGGAACCCCATGGCATTATGCTGCAAAGAAACAAGCGCAAATATGGAAATCTAGATGAACTTGCAGCAACGTGCTTGGCCATGGAAGGTGTTAAAGTAATAAATGGATTGGAATGTAAGATAGCTTGCAACTCGTCCAAGATCTCCTATGTTCTGGACACCGAAGATTTTTTCTTCCGCCCCAAAAGGCAGAGAAAAACATCGTCAGGGACCACATCTTCCCATCATCATCATCGGGCTAGACAGGAAAGATTTTGCAGATTCTTGTCAGTTTCATAA 4194 0.401 MMLLQIEQMGIGTLLALCLLPQMKRTRDDAYASSQLKRPMGSSRGDSYGQSQVPGGGGGGGVGASQKLTTNDALSYLKEVKDMFHDQREKYDMFLEVMKDFKAQRTDTAGVIARVKELFKGHNNLIFGFNTFLPKGYEITLDEDEAPPKKTVEFEEAISFVNKIKKRFQNDEHVYKSFLDILNMYRKEHKDIGEVYNEVAALFEDHPDLLEEFTRFLPDTSATPSTQHTPYGRNSFQRFNERSSTAPMMRQMQQRYRRDRLSSHDRDPSVDTPELDDDKAIIKTHKEQKKRVDKESRDRKIRDQDEREPDHDNNRVFPDKKKSVKKAEGFGLTADFASYDDKDTLKSMYNQAFSFCEKVKEKLGSSDDYQAFLKCLHIFSNGIIKRNDLQNLVTDLLGKYPDLMDEFNEFLERCENIDGFLAGVISKKSLCGDGQLSRTFKLMDKDKDQKREIDGAKDKERHREKYLGKSIQELDLSNCQLCTPSYRLLPEDYPIPMASQRSELGAQVLNDHWVSVTSGSEDYSFKHMRRNQYEESLFRCEDDRFELDMLLESVSSAAKCAEELYNSINENKINMEAPICIEDHFSALNLRCIERLYGDHGLDVMDILRKNPTHALPVILTRLKQKQEEWSRCRSDFNKVWAEIYAKNHYKSLDHRSFYFKQQDSKNLSTKSLVAEIKENKAKQQKEYDILQAIAAGNKQPLIPHLEFEYSDVWIHEDLYKLIRYSCEEVFSNKEMSNKIMRLWTTFLELMLGVPSRSHGTENAEDKKTGQRIANFVASNIGGDGNAHGDCILMNSRLPKSDNNEADGRITEVKNGQQTIVAANDKENGSVDCDHVCRDDILMDKGKNNVDSREKVSGFSKQIASDEQSAINNTPIAVRGETSLSKTSLEITSGSVLNPARPTATLGDDANSQSGNGPLMEGQDIAPPLPLANGVLIESSKVKSHDESAGPCKVEKEEGELSPNVDSEEDNFVGYGDSSGQALPKANHNIDRRNFEPINEEEECCPEAGGDNGADADDEDSDNVSEAGEDASGSESAGDACSREEHEEEEDIERDDVEGKAESEGEAEGICDAQSAGGEGSSLPLSERFLFSVKPLTKRVSAVSLVEERNNSRVFYGNDDFFVLFRLHQILYERILLAKKYSMSAEMKWKTTKEACSPDPYSRFMNALYNLLDGSADNAKFEDECRAIIGNQSYVLFTLDKLIYKLVRQLQTVATDEIDNKLLQLYEYEKSRKPGKFIDSVYHANARVILHDENIYRLECTSTPSRLFIQLMDNMNEKPEVFAVSIDPNFSFYLYNDFLSVSPGKKEPHGIMLQRNKRKYGNLDELAATCLAMEGVKVINGLECKIACNSSKISYVLDTEDFFFRPKRQRKTSSGTTSSHHHHRARQERFCRFLSVS 1397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere02g1995 1397 Gene3D Paired amphipathic helix 343 416 IPR036600 GO:0006355
Dere02g1995 1397 MobiDBLite consensus disorder prediction 30 64 - -
Dere02g1995 1397 Gene3D Paired amphipathic helix 72 134 IPR036600 GO:0006355
Dere02g1995 1397 FunFam Paired amphipathic helix SIN3-like protein 149 220 - -
Dere02g1995 1397 ProSiteProfiles PAH domain profile. 150 220 IPR003822 GO:0006355
Dere02g1995 1397 SUPERFAMILY PAH2 domain 147 219 IPR036600 GO:0006355
Dere02g1995 1397 MobiDBLite consensus disorder prediction 896 919 - -
Dere02g1995 1397 Pfam Sin3 family co-repressor 482 572 IPR013194 -
Dere02g1995 1397 FunFam Paired amphipathic helix protein SIN3 342 416 - -
Dere02g1995 1397 Pfam Paired amphipathic helix repeat 367 411 IPR003822 GO:0006355
Dere02g1995 1397 Pfam Paired amphipathic helix repeat 173 217 IPR003822 GO:0006355
Dere02g1995 1397 Pfam Paired amphipathic helix repeat 89 133 IPR003822 GO:0006355
Dere02g1995 1397 SMART hdac_interact2seq4b 478 578 IPR013194 -
Dere02g1995 1397 MobiDBLite consensus disorder prediction 1001 1026 - -
Dere02g1995 1397 Pfam C-terminal domain of Sin3a protein 1115 1363 IPR031693 -
Dere02g1995 1397 SUPERFAMILY PAH2 domain 348 414 IPR036600 GO:0006355
Dere02g1995 1397 MobiDBLite consensus disorder prediction 219 320 - -
Dere02g1995 1397 MobiDBLite consensus disorder prediction 940 1081 - -
Dere02g1995 1397 ProSiteProfiles PAH domain profile. 66 136 IPR003822 GO:0006355
Dere02g1995 1397 MobiDBLite consensus disorder prediction 219 251 - -
Dere02g1995 1397 ProSiteProfiles PAH domain profile. 345 414 IPR003822 GO:0006355
Dere02g1995 1397 FunFam Paired amphipathic helix protein Sin3 72 134 - -
Dere02g1995 1397 PANTHER SIN3B-RELATED 65 1258 IPR039774 GO:0003714
Dere02g1995 1397 Gene3D Paired amphipathic helix 149 221 IPR036600 GO:0006355
Dere02g1995 1397 Coils Coil 674 694 - -
Dere02g1995 1397 MobiDBLite consensus disorder prediction 940 961 - -
Dere02g1995 1397 MobiDBLite consensus disorder prediction 896 925 - -
Dere02g1995 1397 MobiDBLite consensus disorder prediction 36 50 - -
Dere02g1995 1397 MobiDBLite consensus disorder prediction 253 320 - -
Dere02g1995 1397 SUPERFAMILY PAH2 domain 65 135 IPR036600 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere02g1995 Dere-ChrDere02 20189081 20202933 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere02g1995 53 169 WRKY Transcription Factor Family AT4G12020 50.847 3.42e-23 105
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Dere02g1995 Sin3a_C 1.3e-55 No_clan