Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere02g1990 ATGTTGTGCGTTGTAACTTGTAAGCAACAGAGATCACGTATGGGGAAAATGGCGGGAGAGACAAGCTTGGATGGAGAAATTAAGACATGTGACACGACAGGATCAGCAAGTCATCCACCAACTGAAGGTCCTAACAATATCCAAGCCAAGACAGAGAGGCAGCAGCAAGATTCAAAGAAGAGCAAGGCCAAAGAGGGAACCAATAAAACAGTTCCTTTTTACAAGCTTTTCTCATATGCAGACACCTGGGATCGTCTATTAATGTTTTTTGGGACAACAGCTGCTGCTGCTCACGGAATGACTGTGCCTCTAATGACTGTAATTTTCGGAGATGCCATTGATGCATTTGGAAGAAATAGTAACACCAAAGAAGTTGTCCATGATGTTTCCAAGGTGTCTCTAGACTTTGTATACTTGGCTGTGGGTACCTTTGTTGCTTCATTTTTGCAGGTGACTTGTTGGATGGTCACTGGGGAGAGACAAGCAGCAAGAATAAGAAGCTTATACCTTCAAGCAATTTTGAGACAAGATGTTAGCTTCTTTGATAGGGAAACCAACAGTGGTGAGGTTATTGCAAGGATGTCAAGTGATACAGTTCTTATTCAAGAGGCCATGGGCGAGAAGGCAGGAAAGTTCATACAGCATGTGACCACATTTTTAGGAGGTGTCATCATAGCATTTTCCAAGGGCTGGCTTCTAACCCTTGTCCTTCTCGCTTTTATTCCACCTCTTGTTCTCTCCAGTGTCCTGATGAGCTTTGTTGTAGCAAAGATGGCATCCCGCGGACAATCAGCTTATTCTGCAGCAGCAAATGTCGTAGATCAGACAATCAGTTCTATTCGAACTGTTGCATCATTCACAGGGGAGAAGCAAGCTATAGCTCAATACAATAAATCATTACTAAAAGCTTATCGTTCTGGTCTGCAAGAGGGAGTAGCATCTGGTATGGGTTTTGGTTCCGTTCGATTTTTTGTGTACTGCGGTTATGCTTTGACCCTCTGGTATGGAGGGAAGCTGGTGCTAGAGAAAGGATATACAGGAGGGCAAGTCATGAGTGTCTATTTCGCAATATCCACTTGCTCCTTATCTCTTGGGCATGCATCTCCAAGCTTGACTGCCTTTGCTGCAGGACAAGCTGCAGCCGTGAAAATGTTTCAAACAATTAAGAGGAAACCAGACATTGATTCTTATGACACTTCTGGTCGACAACTAGATGATATTCGTGGGGATATAGAACTGAAGGAGGTTTGCTTTAGTTATCCTTCAAGACCAGATGAACTGATATTCAATGGATTTTCTCTTTCAATACCTAGTGGCACTGCTGCTGCTTTGGTAGGGCAAAGTGGGAGTGGGAAATCAACAGTTATTAGTTTGATAGAAAGATTTTATGATCCACAAGCTGGCGAAATTCTTATTGATGGTATCAATCTCAGAGAGTTTCGGTTGAAATGGATCAGACATAAAATAGGCCTTGTTAGCCAAGAACCAGTTCTCTTTGCTTGCAGTATTAAAGAGAATATTGCTTATGGAAAGGATGATGCAACGGATGAAGAAATCAGAGCAGCAGCAGAACTTGCTAATGCTACTAAATTCATTGATAAACTTCCTCAGGGACTAGACACAATGGTAGGTGACAAAGGAACTCAACTTTCTGGGGGTCAAAAGCAGAGAGTTGCGATTGCGAGAGCAATCTTGAAAGACCCCAGAATTCTACTACTTGATGAAGCTACAAGTGCCCTGGATGCTGAATCTGAGAGAGTAGTGCAGGAGGCACTCGACAGAATTATGGTAAGCAGGACAACTGTAATTGTCGCCCACCGCTTGAGTACTATAAGGAACGCCGATATTATTGCCGTCATTCATCAAGGAAAGATAGTAGAAAAAGGTTCACATCCTGAGCTCACAAGGGATCCTGATGGAGCCTATAGCCAGCTCATTAGGTTGCAAGAAACAAAAAGGGAGTCGGAACAAAGTGGAGCAAATGACAAGGACAGGCCAGAAAGCTTTCTAGACTCCGGACGACAATCAAGTCAACGTTTTTCTTTCCTTCGATCTATAAGCCAAGGATCATCTGGAAAAGGAAATAGCAGTCGTCATTCTTTCTCAATGTCATATGGTGTGCCTACTGCAGTCAGCCCCTTGGAAAAAGTAGGTGGAGACTTTGAAGCTCCTTCCACAGTATCACATAACCCTGCACAAGTCTCACTTCTCCGCCTTGCTTACCTTAACAAGCCTGAATTCCCAGTGTTACTCACAGGGACTTTGGCTGCAGCAATAAATGGTGCAATATTACCCATTATGGGGCTCTTGCTTTCCAACATGATAAATACCTTCTATGAGCCTGCAGATAAACTCCGTAAAGATTCAAAATTTTGGGCATTTGTATTTATTGCACTCGGTGTGACAGCCTTCTTATCTCACCCAATAAGATCCTACTTGTTTGCTGTAGCTGGTTGTAAATTGATAAAAAGGATTCGACTACTGTGTTTCGAAAAAGTAATTCATATGGAAATAGGGTGGTTTGACAAAGCTGAGCATTCAAGTGGAGCACTTGGAGCAAGGCTTGCTACTGATGCTGCTTCTATTCGAGTTTTGGTTGGGGATGCACTAGGTTTGCTGATTCAAGATATTGCTACTGCAATTACTGCCTTGGTAATCGGCTTTGAGGCAAATTGGCAGCTTGCTTTGATCATTCTTATTTTGCTTCCTATACTGGTTATAAATGGTCAATTGCAAGTAAAATCCATGCAAGGATTCAGCAGAGATGCAAAGAAACAGTATGAGGAAGCAAGCCAAGTTGCAAATGATGCAATAGGGAGCATTAGAACAGTTGCTGCTTTCTGTGCTGAAGAGAAGGTGATGGAGTTATACCAAAAGAAATGTGAAGGACCAAAGAAAACAGGTATAAGGCAAGGGTTAGTCAGTGGAACTGGTTTAGGGTTATCATTCCTTTTTTTGTATTCAGTCTATGGATGTAGTTTTTATGCTGGAGCACGACTTGTTCAGGAGGGCAAAACATCAATCTCGGATGTTTTCCGTGTCTTCTTTGTTCTCACTATGGCAGCTATAGCACTCTCTCAATCAGGTTTTGTGGCCCCAGGTGCAAGTAAAGCAAAAAGTTCCATTGCTTCAATATTTGCTATTCTTGATCAGAAATCAAAAATAGACCCCAGTGATGAATCTGGAATGACATTGCAAGATGTGAAGGGAGAAGTTGAGTTTCGCCATGTCACCTTCAAGTATCCCACCAGGCCTGAGGCTCAAATATTCAGAGATCTTTGCTTGGCCATTCATTCAGGAAAGACAGTTGCACTAGTAGGAGAAAGCGGATGTGGGAAGTCCACTGTAATTTCATTGCTGCAAAGATTTTATGACCCAGACTCAGGTCACATTACATTGGATGGAATTGAAATCCATAAGTTGCAAATCAAATGGTTAAGGCAACAAATGGGTTTGGTAAGCCAGGAGCCTGTGTTGTTTAATGACACTATCCGAGCCAATATTGCATATGGAAAAGAAGGAGATGCAACAGAAGCAGAAATCACAGCAGCCGCAGAATTGGCAAATGCTCATAAGTTCATTTGTAGTTTGCATCAGGGGTATGACACAACTGTGGGGGAGCGAGGAGTTCAATTATCTGGGGGACAGAAGCAGCGGGTGGCGATAGCACGAGCCATAGTGAAGAATCCTAGAATGTTACTACTAGATGAAGCCACCAGTGCCCTTGATGCTGAATCTGAAAAAGTGGTTCAAGATGCACTGGACCGTGTCAAAGTGGGCAGAACCACAATTGTCGTGGCCCATAGGTTATCCACTATTAAGAATGCAGATTTAATTGCAGTGGTTCAAAATGGAGTCATCGCAGAGAAAGGAAAGCATGAAACTTTGCTCAAGAAGGGCGGAGCTTATGCTTCCTTACTAGCACTTCACGAGAGCGCTTCTTAA 3945 0.4286 MLCVVTCKQQRSRMGKMAGETSLDGEIKTCDTTGSASHPPTEGPNNIQAKTERQQQDSKKSKAKEGTNKTVPFYKLFSYADTWDRLLMFFGTTAAAAHGMTVPLMTVIFGDAIDAFGRNSNTKEVVHDVSKVSLDFVYLAVGTFVASFLQVTCWMVTGERQAARIRSLYLQAILRQDVSFFDRETNSGEVIARMSSDTVLIQEAMGEKAGKFIQHVTTFLGGVIIAFSKGWLLTLVLLAFIPPLVLSSVLMSFVVAKMASRGQSAYSAAANVVDQTISSIRTVASFTGEKQAIAQYNKSLLKAYRSGLQEGVASGMGFGSVRFFVYCGYALTLWYGGKLVLEKGYTGGQVMSVYFAISTCSLSLGHASPSLTAFAAGQAAAVKMFQTIKRKPDIDSYDTSGRQLDDIRGDIELKEVCFSYPSRPDELIFNGFSLSIPSGTAAALVGQSGSGKSTVISLIERFYDPQAGEILIDGINLREFRLKWIRHKIGLVSQEPVLFACSIKENIAYGKDDATDEEIRAAAELANATKFIDKLPQGLDTMVGDKGTQLSGGQKQRVAIARAILKDPRILLLDEATSALDAESERVVQEALDRIMVSRTTVIVAHRLSTIRNADIIAVIHQGKIVEKGSHPELTRDPDGAYSQLIRLQETKRESEQSGANDKDRPESFLDSGRQSSQRFSFLRSISQGSSGKGNSSRHSFSMSYGVPTAVSPLEKVGGDFEAPSTVSHNPAQVSLLRLAYLNKPEFPVLLTGTLAAAINGAILPIMGLLLSNMINTFYEPADKLRKDSKFWAFVFIALGVTAFLSHPIRSYLFAVAGCKLIKRIRLLCFEKVIHMEIGWFDKAEHSSGALGARLATDAASIRVLVGDALGLLIQDIATAITALVIGFEANWQLALIILILLPILVINGQLQVKSMQGFSRDAKKQYEEASQVANDAIGSIRTVAAFCAEEKVMELYQKKCEGPKKTGIRQGLVSGTGLGLSFLFLYSVYGCSFYAGARLVQEGKTSISDVFRVFFVLTMAAIALSQSGFVAPGASKAKSSIASIFAILDQKSKIDPSDESGMTLQDVKGEVEFRHVTFKYPTRPEAQIFRDLCLAIHSGKTVALVGESGCGKSTVISLLQRFYDPDSGHITLDGIEIHKLQIKWLRQQMGLVSQEPVLFNDTIRANIAYGKEGDATEAEITAAAELANAHKFICSLHQGYDTTVGERGVQLSGGQKQRVAIARAIVKNPRMLLLDEATSALDAESEKVVQDALDRVKVGRTTIVVAHRLSTIKNADLIAVVQNGVIAEKGKHETLLKKGGAYASLLALHESAS 1314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere02g1990 1314 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 89 376 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Dere02g1990 1314 MobiDBLite consensus disorder prediction 650 670 - -
Dere02g1990 1314 Pfam ABC transporter transmembrane region 751 1021 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Dere02g1990 1314 Pfam ABC transporter transmembrane region 88 360 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Dere02g1990 1314 ProSitePatterns ABC transporters family signature. 1212 1226 IPR017871 GO:0005524|GO:0016887
Dere02g1990 1314 SMART AAA_5 1099 1292 IPR003593 GO:0016887
Dere02g1990 1314 SMART AAA_5 438 631 IPR003593 GO:0016887
Dere02g1990 1314 MobiDBLite consensus disorder prediction 26 52 - -
Dere02g1990 1314 Pfam ABC transporter 430 578 IPR003439 GO:0005524
Dere02g1990 1314 MobiDBLite consensus disorder prediction 650 676 - -
Dere02g1990 1314 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 751 1037 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Dere02g1990 1314 FunFam ABC transporter B family member 1 1062 1311 - -
Dere02g1990 1314 FunFam ABC transporter B family member 1 401 650 - -
Dere02g1990 1314 SUPERFAMILY ABC transporter transmembrane region 69 393 IPR036640 GO:0005524|GO:0016020
Dere02g1990 1314 Gene3D - 1062 1313 IPR027417 -
Dere02g1990 1314 CDD ABC_6TM_Pgp_ABCB1_D1_like 88 372 - -
Dere02g1990 1314 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 403 649 IPR027417 -
Dere02g1990 1314 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 411 647 IPR003439 GO:0005524
Dere02g1990 1314 Pfam ABC transporter 1092 1240 IPR003439 GO:0005524
Dere02g1990 1314 CDD ABC_6TM_Pgp_ABCB1_D2_like 740 1055 - -
Dere02g1990 1314 MobiDBLite consensus disorder prediction 14 65 - -
Dere02g1990 1314 CDD ABC_MTABC3_MDL1_MDL2 1072 1306 - -
Dere02g1990 1314 FunFam Uncharacterized protein 1036 1062 - -
Dere02g1990 1314 Gene3D ABC transporter type 1, transmembrane domain 90 436 IPR036640 GO:0005524|GO:0016020
Dere02g1990 1314 Gene3D ABC transporter type 1, transmembrane domain 696 1060 IPR036640 GO:0005524|GO:0016020
Dere02g1990 1314 Gene3D - 437 658 IPR027417 -
Dere02g1990 1314 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1072 1309 IPR003439 GO:0005524
Dere02g1990 1314 ProSitePatterns ABC transporters family signature. 550 564 IPR017871 GO:0005524|GO:0016887
Dere02g1990 1314 FunFam ABC transporter B family member 9 75 407 - -
Dere02g1990 1314 CDD ABC_MTABC3_MDL1_MDL2 411 649 - -
Dere02g1990 1314 PANTHER ABC TRANSPORTER B FAMILY 50 652 IPR039421 -
Dere02g1990 1314 FunFam ABC transporter B family member 1 730 1035 - -
Dere02g1990 1314 SUPERFAMILY ABC transporter transmembrane region 738 1056 IPR036640 GO:0005524|GO:0016020
Dere02g1990 1314 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1061 1308 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere02g1990 Dere-ChrDere02 20140655 20145989 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere02g1990 62 1310 Calmodulin-binding Proteins AT2G36910 44.304 0.0 1050