Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere02g1979 ATGACTTGTGGGATTACCCAAATGGGTAGGGTGGTAGTGGTAGTTGACGACGGAGCAGCTGAAGTGCAAACGGGGTCGTTTTGGGATGCCATTAAAGACATGACAGTGACGTGTATAGAATTTTCACAGTGCTCCAGAATATTCAATGCTGAGGTTTTTGTTTCGGGTCTAGGAGGTGGAATTCAGTTGGAATTGATGTTTCTTTTCAAGGGCGAAGTTAAAATTAATACAGAACTCAAAGGAGATGGAGGGCTATGCATGGGTTGGAAGGTGAGGAGTGGAAACAGAGGCGGCACATGTTGCCTGTCCCTGCCAACGCGACGACTGTTGTATCGGTTTTGTATGAATAAATTGCTTACCAATGTTCGACACCAACTTAAAGATGGACGCAAAATTCTTGTTGGTGATTGTGCACTTTTCAAACCACCTGAAGATTCCCCTCCTTTTATTGGAATAATTCGCAAGTTAACTCTGAATAAGGAGGAAAGCCCAAGCTTAGAAGTGAATTGGCTTTACAGACCTGCTGATTTGAAGCTTGCGAAGGGTATCTTACTGGAAGCTGCGCCAAACGAGGTCTTCTACTCATTTCACAAGGATGAAACACCTGCCGCATCATTACTCCATCCGTGTAAAGTTGCATTCCTTCGAAGAGGTGTTGAACTTCCATCAGGGATATCTGCATTTGTCTGTAGACGTGTCTATGACATTGAGAACAAGCGTTTATGGTGGTTAACTGATAAAGACTACCTTAATGAACGTCAGGAAGAAGTTAACCAGCTATTAGATAAGACAAGACTAGAAATGCATGGGGCAGTGCAGTCGGGAGGCCGTTCACCAAAACCTTTGAATGGTCCAACATCAGCACCATCACTGAAATCTGGTGCCGATAGCTCTCAAAATAGTCCTTTTGGTTCACAGGGTAAGGGGAAAAAGAGAGAACGGGTTGATCAGGGATCTGATTCATCCAAAAGAGAGCGGTTAACTAAAACAGAAGATGCAGATTCTGATCAATTTAGGCCAGAGATAATTTTAAAGTCTGAGATTGCTAAAATTACTGATAAAGGTGTGCTTGTGGATTTTGAAGGAGTTGAAAGACTGGTACAGCTCATGCAACCTGACAGAACTGATAAAAAATTAGATTTGGCTGGACGGATAATGCTTGTTGATGTTATAGCTGCCACAGATAATTTTGACTGTCTTGGTTGGTTTGTACAGCTAAGGGGATTGCCTGTATTAGATGAATGGCTTCAGGAGGTGCATAAGGGGAAAATTGGTGATGTTAGCATGCCTAAAGAAAGTGATAAGTCTGTTGAAGAATTCTTGTTAGCTTTACTTCATGCATTGGATAAGCTCCCTGTGAATCTTCATGCACTGCAAACCTGTAATGTTGGAAAGTCTGTCAATAATTTGCGTAGTCACAAAAATTCTGAAATTCAAAAGAAAGCAAGGAGTTTAGTTGACACATGGAAGAAACGTGTTGAGGCTGAAATGAATAAAAATGATGCAAAATCTGGTTCAACCCGAGCCCTTTCTTGGCCAGCAAAGCCAGCACCTTCTGAGGTTTCTCAAATTGGAAATAGGAAAACAGGAGGATCTGCTGAGGTCACTGCAAGGTGCTCTGCAACGCAAAGCATGGCATCTAAAAGTTCCCAAGCTAAGCCTAGCACTGGAGAAGCATTGTCTAAATCCTCTCAATCTCCTGGTTCAGCCAAATCAATGACTGCTTCAGTGGGATGCAATTCAAAGGAGCAGAATGATAAGATATTGGTGGGAGCTGGAGCATCAGATTTACCCTTGACACCTATTAAGGAGGAAAGGTGCAGTAGTTCTAGTCAACCTCAAAACAACAGCTTATCTTGTTCGAGTGAACATGCAAAAACTGTTGGTACTTGTAAGGAAGATGCAAGAAGCTCCACTGCTGTGCCAATGAGTGCAACCAAAACCCCTGGTGGTGCATCCCGATCCCGAAGATCAAGCAATGGTTTGCATGGATCAGCTGTCATTGCAGTTCAGAAGGAGTCCAATTCTGGAAAAAACCCAACTAGAAATTCACCTTCTGAATCAATGTCACCACCTGAAGTATCCCATGAAAAGTTACCAGATGTACCCCTTGCTGATCATGGGAATAATCAACAACCAATTGTCAGGTTGCAAAATGCTGGTTGTAATCCTGCTAGGGTAGCTACTGTGGGGTCTTTTGAAGATCCTGTGATTGCATGCGGCAATGCCCCGCCCTCTGTTGATAAGAAAGACAATCAGGACCGAAGGGTGAAATCCAAAATTGATAGTTTGCAGACTAATGTTGTGCCAAATATGACCCCTGGTCTATGTGAAACTAATGAAGTTCTGACTGGTTATGAGGAAGGTAGTGACTCCCCAACAGGTGATGAATGTTTCAGGGCCATTGAAGATGGTGATAAAGTGGCAGAAATGTCAAAACCAAGTTCAGGATTTGTCTCCAGAACAGGACAAATTAATGATGCTTCTTTAAACTCCATGAACGCATTAATTGAAAGTTGTGTGAAATTTTCTGAAGCAAGTACATCTGTGTCCCTTGGTGACGATATTGGGATGAACCTACTTGCTACTGTGGCTGCAGGGGAGATGTCCAGATCTGAAAATACGTCACCTTTGGCTTCTCCAAGGGGGAAATCTCTTGGGGTGGATGAAGCAGATTCAGTCAATGATGGCAAGTCAAAGTGTTCAGGTGAGGCAATTGTTTGTACTTCTGGACAATCTCATGGTGGGGCTATCGGGGAGCATGTGAACACTGTTGATCCATTGCAATCCAAGAATGTCACAAGGCATCCTGTTACACGAATGTCTGTAGATGGTGAACCCACTTCATCTGGTTCTACAGAGAAAACTGGCGAGGGCTTACGGTCTGAAAACAAAGAGGATGCTTCTGAAACTATATTATCTGCTCAAAAGGAGACTGTTGCAAAGTCTGAAGAAGTGAATCAGTTTCATGAGCGGAGGGAATTGGGAACTCAATGGGATCAATGCACCATTAGTTCAGAGTCTTTGAAAGCAATGACAACCTCTTTTCATGAAGCTCGGAAGGTTGATCTTGTGGATGAGGGAACTAGGGAGAAAGATGAAGTCTTGGTATCAGAAGGTGCTGACACTATTTTAACAAATGAGAAAGCGGCCAATGAAAAATTACCCAAATCTTTCTCAGACTTGGGTGTGGCTAATGAGATTAGTGCAGAGAAAGCAACAGGAAATGGCATCTTTGTCCAAAATCCATCTCCTATGGTAGAAAACTGTGAATCCACAGAGGGCAAAAATGAGGATGTTGTACTACCTTCTGATTTGGGTACTGCTTTGATGGAATCTGAGGCTGAACATGCCAGTAACTTGAAGGAAGTTGAGCTTGAACATAATGAAAGGCAATTAAATCTGGACTCATCTCTCTTAGATGGTATTGATGGATGTACTGAAGTAACTGTGGATAGTAAAGAGGTTCTTGGTCAGTGTTCCGGCTCATCTGTTCACTCTGAGTCACAAAAAATGCCTATGCATGAGAATGAAGTTTGTAAAAAGTCTTCTGGATGTAATGTAGATAGAATTGAGTCTGAGGCTGCAGGAGAGTGGCATGCATCCAGTATTAATGCATCGCTTGCTGTTGCAGGGTCAGATACAGCAGTAAAGTTGGAATTTGATCTGAATGAGGGATTTCCTGTTGATGATTTTAGCCAAGGGGAAACTGTCAGGCAGGAAGAATGTTTCACATCATCTGCTGCTCACATGCCTTGCCCATTGCCTTTTCTCATTTCCTCCACGTCTGGAGGTTCTAATGCTTCAGTTACTGTTGCTTCTGCTGCCAAAGGGCCTGTTATTCCGCCAGAGAACCCAGTGATGAATAAAGGGGAACTTGGATGGAAAGGGTCAGCTGCTACTAGTGCATTTCGGCCAGCTGAACCTAGAAAAAATGCAGAACTGCTGTCTAATACAAACAATCTTCCTTCTGTTGATAGCGCCTCCACCAAGCAAGTCCGTGCTCCTTTAGATTTTGATTTGAATGTGCCAGATGAGAGAAGTTTTGAGGATGTGGCTTCCCATGGCTCTAGTGGGAGGAATTGTGGCAGTGCGGGACTTGATCTTGATTTGAATAGAGTTGATGAGACTCCTGATGCTGGGTCTTTCTCTATGAGCAAATTGGATATTCCTTCTTTACCAAATAAGCCTTCATTTTCTTGTGGAGTATCTAATGGTGGAAGCATCTCTAGAGACTTTGATTTAAATAATGGGCCAGGCCCTGGTGAAGTGAGCACTGAAGCTCCTGCTCACAGTCAGCAGAGACAAAATACTGTTCCATTTCCATCTGCAATACATTGTTTAAGAATGAACAATGCTGAATCTGGGAATTATTCATCATGGTTTCCTTCAGTCAATTCCTATTCTTCAAATACTGTCCCACCAGTTTTGCCCAGCAGAGGAGAGCAGAGCTATGTTGCTGGTGTTGCAGCACAGCGGATCTTGGGCCCTTCAGGTGGCACAGCTTTCAGACCTGAAATATACAGGGGGCCTGTGCTGTCATCCTCTCCAGCTGTTGCATATCCACCCACTATGCCATTTCCATACCCTGGATTTCCATTCGAAACTAGTTTTCAGTTGTCTTCAAACTCCTTTTCTGGTTCTTCAACATCATTTATGGATTCCTCAACTGCTGGCGGACTTCGTTTTCCTACCATACCCTCACAGCTGGTAGGGCCTGGTGGTGTTGTCTCAACCACTTATCCCCGTCCGTATGTTATGAATCTTCCGGGTGGGACAAGTAATGTGATAGCTGAAAGTAGAAAATGGGCAAGTCAAAGTCTAGATCTTAATTCAGGTCCTGTTGGCATTGATAGAGGAACAAATGAAGATGTTTCAGATGGCAGGAGGTGTATTGAAGAGAAAGGAGCCTGA 4914 0.4337 MTCGITQMGRVVVVVDDGAAEVQTGSFWDAIKDMTVTCIEFSQCSRIFNAEVFVSGLGGGIQLELMFLFKGEVKINTELKGDGGLCMGWKVRSGNRGGTCCLSLPTRRLLYRFCMNKLLTNVRHQLKDGRKILVGDCALFKPPEDSPPFIGIIRKLTLNKEESPSLEVNWLYRPADLKLAKGILLEAAPNEVFYSFHKDETPAASLLHPCKVAFLRRGVELPSGISAFVCRRVYDIENKRLWWLTDKDYLNERQEEVNQLLDKTRLEMHGAVQSGGRSPKPLNGPTSAPSLKSGADSSQNSPFGSQGKGKKRERVDQGSDSSKRERLTKTEDADSDQFRPEIILKSEIAKITDKGVLVDFEGVERLVQLMQPDRTDKKLDLAGRIMLVDVIAATDNFDCLGWFVQLRGLPVLDEWLQEVHKGKIGDVSMPKESDKSVEEFLLALLHALDKLPVNLHALQTCNVGKSVNNLRSHKNSEIQKKARSLVDTWKKRVEAEMNKNDAKSGSTRALSWPAKPAPSEVSQIGNRKTGGSAEVTARCSATQSMASKSSQAKPSTGEALSKSSQSPGSAKSMTASVGCNSKEQNDKILVGAGASDLPLTPIKEERCSSSSQPQNNSLSCSSEHAKTVGTCKEDARSSTAVPMSATKTPGGASRSRRSSNGLHGSAVIAVQKESNSGKNPTRNSPSESMSPPEVSHEKLPDVPLADHGNNQQPIVRLQNAGCNPARVATVGSFEDPVIACGNAPPSVDKKDNQDRRVKSKIDSLQTNVVPNMTPGLCETNEVLTGYEEGSDSPTGDECFRAIEDGDKVAEMSKPSSGFVSRTGQINDASLNSMNALIESCVKFSEASTSVSLGDDIGMNLLATVAAGEMSRSENTSPLASPRGKSLGVDEADSVNDGKSKCSGEAIVCTSGQSHGGAIGEHVNTVDPLQSKNVTRHPVTRMSVDGEPTSSGSTEKTGEGLRSENKEDASETILSAQKETVAKSEEVNQFHERRELGTQWDQCTISSESLKAMTTSFHEARKVDLVDEGTREKDEVLVSEGADTILTNEKAANEKLPKSFSDLGVANEISAEKATGNGIFVQNPSPMVENCESTEGKNEDVVLPSDLGTALMESEAEHASNLKEVELEHNERQLNLDSSLLDGIDGCTEVTVDSKEVLGQCSGSSVHSESQKMPMHENEVCKKSSGCNVDRIESEAAGEWHASSINASLAVAGSDTAVKLEFDLNEGFPVDDFSQGETVRQEECFTSSAAHMPCPLPFLISSTSGGSNASVTVASAAKGPVIPPENPVMNKGELGWKGSAATSAFRPAEPRKNAELLSNTNNLPSVDSASTKQVRAPLDFDLNVPDERSFEDVASHGSSGRNCGSAGLDLDLNRVDETPDAGSFSMSKLDIPSLPNKPSFSCGVSNGGSISRDFDLNNGPGPGEVSTEAPAHSQQRQNTVPFPSAIHCLRMNNAESGNYSSWFPSVNSYSSNTVPPVLPSRGEQSYVAGVAAQRILGPSGGTAFRPEIYRGPVLSSSPAVAYPPTMPFPYPGFPFETSFQLSSNSFSGSSTSFMDSSTAGGLRFPTIPSQLVGPGGVVSTTYPRPYVMNLPGGTSNVIAESRKWASQSLDLNSGPVGIDRGTNEDVSDGRRCIEEKGA 1637
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere02g1979 1637 MobiDBLite consensus disorder prediction 496 579 - -
Dere02g1979 1637 MobiDBLite consensus disorder prediction 870 896 - -
Dere02g1979 1637 MobiDBLite consensus disorder prediction 631 691 - -
Dere02g1979 1637 MobiDBLite consensus disorder prediction 279 306 - -
Dere02g1979 1637 Gene3D - 124 351 IPR043151 -
Dere02g1979 1637 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 361 498 IPR035441 -
Dere02g1979 1637 MobiDBLite consensus disorder prediction 1410 1436 - -
Dere02g1979 1637 MobiDBLite consensus disorder prediction 269 333 - -
Dere02g1979 1637 PANTHER BAH AND TFIIS DOMAIN-CONTAINING PROTEIN-RELATED 119 1624 - -
Dere02g1979 1637 MobiDBLite consensus disorder prediction 1608 1637 - -
Dere02g1979 1637 ProSiteProfiles BAH domain profile. 130 245 IPR001025 GO:0003682
Dere02g1979 1637 Pfam TFIIS helical bundle-like domain 444 493 IPR017923 -
Dere02g1979 1637 ProSiteProfiles TFIIS N-terminal domain profile. 410 496 IPR017923 -
Dere02g1979 1637 MobiDBLite consensus disorder prediction 940 972 - -
Dere02g1979 1637 MobiDBLite consensus disorder prediction 522 579 - -
Dere02g1979 1637 MobiDBLite consensus disorder prediction 307 333 - -
Dere02g1979 1637 MobiDBLite consensus disorder prediction 958 972 - -
Dere02g1979 1637 SMART TFS2_5 416 495 IPR003617 GO:0005634
Dere02g1979 1637 Pfam BAH domain 133 241 IPR001025 GO:0003682
Dere02g1979 1637 MobiDBLite consensus disorder prediction 631 709 - -
Dere02g1979 1637 SMART BAH_4 130 245 IPR001025 GO:0003682
Dere02g1979 1637 MobiDBLite consensus disorder prediction 1622 1637 - -
Dere02g1979 1637 CDD TFIIS_I 418 494 - -
Dere02g1979 1637 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 398 506 IPR035441 -
Dere02g1979 1637 MobiDBLite consensus disorder prediction 940 957 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere02g1979 Dere-ChrDere02 20023236 20033056 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Dere02g1979 BAH 4.7e-11 No_clan