Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere02g1972 ATGGTTGATGCTGAGAAGGTCAACAACAGGGGGCTCGGTGCTATTGCTCAGGCAGAGTCTCTGCGTTACAAGCTTCTTGGAGGGCTTGCTGTCCGAAGGGCTTGCTATGGTGTCCTTAGGTTTGTTATGGAAAGTGGTGCCAAAGGTTGTGAGGTTATTGTTAGTGGTAAGCTCAGGGCTCAGCGTGCCAAATCTATGAAATTCAAGGATGGGTACATGATATCATCCAATCAGCCTGTCAAGGAATATATTGACTCTGTTGCGAGGCATGTGCTTATGAGACAGGGTGTTCTTGGTATCAAGGTGAAAATTATGCTTGATTGGGATCCTAAGGGCAAGCAAGGCCCGACTAAACCCATTCCGGATCTTGTCACCATCCACCCACCAAAAGGAGGAAGACGAAGATGGCTACCACCTCCGTTTCTACGATCACCACTCTTTTCTTCCTTCTCTTCTTCATCTACTATCGGTGTTATGGGTAAATATGCTGCAGGAGAACTCAAGCCGCCTAAAGCTGCTACTTTGCGTGGTTTTGGAAAGCATCCTCAGCTCATGCCTTCAACTCCTCGGTGGGCCGTTGCCAATGGTGCTGGTGTTATATTAAGTGTTTGA 612 0.4771 MVDAEKVNNRGLGAIAQAESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSNQPVKEYIDSVARHVLMRQGVLGIKVKIMLDWDPKGKQGPTKPIPDLVTIHPPKGGRRRWLPPPFLRSPLFSSFSSSSTIGVMGKYAAGELKPPKAATLRGFGKHPQLMPSTPRWAVANGAGVILSV 203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere02g1972 203 PRINTS Protein GIGANTEA signature 146 164 IPR026211 GO:2000028
Dere02g1972 203 PRINTS Protein GIGANTEA signature 175 193 IPR026211 GO:2000028
Dere02g1972 203 PRINTS Protein GIGANTEA signature 193 203 IPR026211 GO:2000028
Dere02g1972 203 FunFam 40S ribosomal protein S3 9 139 - -
Dere02g1972 203 Gene3D - 9 133 IPR036419 -
Dere02g1972 203 SUPERFAMILY Ribosomal protein S3 C-terminal domain 9 107 IPR036419 -
Dere02g1972 203 ProSitePatterns Ribosomal protein S3 signature. 63 99 IPR018280 -
Dere02g1972 203 PANTHER 30S/40S RIBOSOMAL PROTEIN S3 3 114 - -
Dere02g1972 203 Pfam Ribosomal protein S3, C-terminal domain 22 104 IPR001351 GO:0003735|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere02g1972 Dere-ChrDere02 19822570 19823563 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere02g1972 4 130 Cytoplasmic Ribosomal Protein Gene Family AT5G35530 86.614 7.80e-78 231