Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere02g1970 ATGCTAGTATTTCTGAATGAAGGACTCACCGAAACTGAAGCTTTGCTCAAATGGAAACAAAATCTCCCAAACCAACCAGTTTTAGATTCATGGGTCTCTGCACAGAACACCAGCTCTAGTGCTGCTCAAACCCCATGTTCATGGCTTGGAATCACATGTGATTCTTCAGGAAGTGTGGTTGAACTAGACTTGAAACGCACTGGTCTTCAAGGTACCCTTCAAAACTTGAACTTCTCAGCATTTCCAAATCTTCTTCTTCTTAATCTCAAATTTAACAAACTCAGTGGCCCCATACCAGAAAGCATTGGGGTGCTTTCAAAACTCCAATTTCTTGACCTTAATCACAATCATCTCAATGGGACTATACCTCTGTCTCTTGCCAATCTTACTCAACTTTATGAGCTTGATCTTTCACAAAACGATCTAACAGGAATCTTAGACCCTCTTCTATTTCCTAATGGCACTGATCAACCCAAAATTGGCCTGATTGGGATCCAAAATCTCGTCTTGCAAGACAACCTCCTTGGTGGTAGAATTCCACACGAAATGGGGAATCTAAGAGATTTAACTATTCTAGCTTTAGATGGGAATAGCTTCTATGGGCCCGTTCCACTATCTTTAGCCAACTGTACAAAGTTAAGTGTTATCTCAATGACAGAAAACCATCTCTCAGGCATAATTCCGCCTAGTACTGGTAGATTGACCAATCTCATTGAGATTCGCCTTCGCAACAACCATTTACATGGTCATGTGCCACAAGAGTTTGGAAATCTTTCATCTTTAACTGTACTGCTTCTTGCTGAGAACAACTTCACTGGTCAATTACCACCGCATGTGTGCAAAGGTGGTAAGCTTGTCAATTTCACGGCAGGCTACAATAGTTTCACTGGTCCAATCCCAGTAAGCCTAGGAAATTGCTCATCATTATTTAAAGTTCAACTTGAACATAACCAACTGACAGGTTATGCAGACCGAGATTTTGGAGTTTATCCTAATCTTACTTACCTTGACATAAGCTACAATAGAGTACAAGGTGAGCTCTCTGCAAATTGGGGTGCCTGTAAAAGCTTGCAACTTCTTAGAGTGGCTGGAAATTCCATACACGGCACTATTCCTGGTGAGATTTTTCAGTTGGGTCAATTAGTAGACCTTGATTTGTCCTACAACAAAATTGCAGGAGATATTCCTCCACAAATAGGGAATTCCTCAAGCCTGTACAATCTATATTTGAATAGCAACAATCTTTCAGGTATCATACCTTTGGCCATTGGAAAGCTCCAATCTGCAGGCTTTAGACCTATCAACGAACATGCTCAATGGACCAATCCCTTACCAAATAGGGAATTGCTACAAATTGCCCTACAATATTTTTTGGACTTGAGTTACAATTCACTCTCTGGAAAAATTCCTGCTGAATTTGGTAAGCTCCAAAATTTGGAAAGCTTAAATATGTCTCACAATAATTTGTCAGGCTCTATCCCTGATTCGCTTAGTAGAATGTTGAGCTTGTCAAGCCTCAACCTCTCATACAATAATTTGGAGGGTCTTGTACCGGATAGTGGCATATTCAATTCTTCCTATCCACTAGATTTGAGTAAAAACAATAAATTATGTGGAAGGATACGTGGCTTACAGCCATGCATTGTCACTGTGACAGAAACACCACATGAAAGTAACAAGATGAAAGTTGTTATAGCTATTGTCACTTCTTTGGGAGGTGCACTGTTTGTCTCATTGTTGGTTGGTACTTTTGCTATTCGCCATAAGAGAAACTCAATAGTTTCAAAAGATCAATGTGCAGCCATGATACAAAATCCTTTTTCAATATGGCACTTCAATGGTAGAGTTGTGTACGAAGACATAATTGAAGCAACTATGAACTTTAATGACATGTATTCAATAGGGGAGGGAGCTTTTGGAAAAGTCTATAAAGTAGTAATGCCAGGAGGTTTGCACACATTTTTAATTTATGATTACATGGAAAGAGGGAATTTAGCTAATATGCTTAGAGATAGCAAAGAAGCATTAAAGTTACATTGGCCTACGAGGGTTGAGATCGTCAAAGGTGTAGCTCAAGCTTTATCTTACATGCATCATGATTGCAATCCACCAATAATTCACAGAGACATTTCAAGCAACAATATATTATTATCTGCACATCTTGAAGCCCATGTCTCAGACTTTGGCACGGCAAGGTTCCTAAAGCCTGATTCATCAATTTGGACAACATTTGCTGGCACATATGGCTATGCTGCTCCAGAGCTTGCATACTCAATGGCAGTGTCTGAGAAATGTGATGTGTTCAGCTTTGGTGTTCTAGCTCTCGAGGTTCTTACGGGAAGGCATCCAAGTGATCTAATTTCCCACATACAAACAAGTGGTCTTCAAAACATCAACTTCAAAGAGATTTTAGATCCACGTCTAACATTGCCCGCAGAAAAAAAGTTGAAGGAATTAACTTTGATTGGGACTCTAGCTCTTTCATGTTTACAAACAAATCCTCCGTCTCGACCAACCATGCGAAGGATAGCCCAGATGATTCAAAAGGATAGTGCTCAACATTGA 2565 0.3984 MLVFLNEGLTETEALLKWKQNLPNQPVLDSWVSAQNTSSSAAQTPCSWLGITCDSSGSVVELDLKRTGLQGTLQNLNFSAFPNLLLLNLKFNKLSGPIPESIGVLSKLQFLDLNHNHLNGTIPLSLANLTQLYELDLSQNDLTGILDPLLFPNGTDQPKIGLIGIQNLVLQDNLLGGRIPHEMGNLRDLTILALDGNSFYGPVPLSLANCTKLSVISMTENHLSGIIPPSTGRLTNLIEIRLRNNHLHGHVPQEFGNLSSLTVLLLAENNFTGQLPPHVCKGGKLVNFTAGYNSFTGPIPVSLGNCSSLFKVQLEHNQLTGYADRDFGVYPNLTYLDISYNRVQGELSANWGACKSLQLLRVAGNSIHGTIPGEIFQLGQLVDLDLSYNKIAGDIPPQIGNSSSLYNLYLNSNNLSGIIPLAIGKLQSAGFRPINEHAQWTNPLPNRELLQIALQYFLDLSYNSLSGKIPAEFGKLQNLESLNMSHNNLSGSIPDSLSRMLSLSSLNLSYNNLEGLVPDSGIFNSSYPLDLSKNNKLCGRIRGLQPCIVTVTETPHESNKMKVVIAIVTSLGGALFVSLLVGTFAIRHKRNSIVSKDQCAAMIQNPFSIWHFNGRVVYEDIIEATMNFNDMYSIGEGAFGKVYKVVMPGGLHTFLIYDYMERGNLANMLRDSKEALKLHWPTRVEIVKGVAQALSYMHHDCNPPIIHRDISSNNILLSAHLEAHVSDFGTARFLKPDSSIWTTFAGTYGYAAPELAYSMAVSEKCDVFSFGVLALEVLTGRHPSDLISHIQTSGLQNINFKEILDPRLTLPAEKKLKELTLIGTLALSCLQTNPPSRPTMRRIAQMIQKDSAQH 854
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere02g1970 854 Gene3D Phosphorylase Kinase; domain 1 589 660 - -
Dere02g1970 854 SUPERFAMILY L domain-like 40 223 - -
Dere02g1970 854 SUPERFAMILY Protein kinase-like (PK-like) 609 847 IPR011009 -
Dere02g1970 854 Gene3D Ribonuclease Inhibitor 154 285 IPR032675 -
Dere02g1970 854 SMART LRR_typ_2 234 257 IPR003591 -
Dere02g1970 854 SMART LRR_typ_2 378 402 IPR003591 -
Dere02g1970 854 SMART LRR_typ_2 500 525 IPR003591 -
Dere02g1970 854 SMART LRR_typ_2 129 153 IPR003591 -
Dere02g1970 854 SMART LRR_typ_2 258 282 IPR003591 -
Dere02g1970 854 SMART LRR_typ_2 476 499 IPR003591 -
Dere02g1970 854 SMART LRR_typ_2 105 128 IPR003591 -
Dere02g1970 854 Gene3D Transferase(Phosphotransferase) domain 1 661 854 - -
Dere02g1970 854 ProSitePatterns Tyrosine protein kinases specific active-site signature. 705 717 IPR008266 GO:0004672|GO:0006468
Dere02g1970 854 PANTHER LEUCINE RICH REPEAT KINASE 2 208 650 - -
Dere02g1970 854 Pfam Protein kinase domain 652 845 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere02g1970 854 Gene3D Ribonuclease Inhibitor 286 552 IPR032675 -
Dere02g1970 854 SUPERFAMILY L domain-like 164 548 - -
Dere02g1970 854 ProSiteProfiles Protein kinase domain profile. 565 854 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere02g1970 854 Gene3D Ribonuclease Inhibitor 9 153 IPR032675 -
Dere02g1970 854 FunFam Leucine-rich repeat receptor-like protein kinase 454 548 - -
Dere02g1970 854 FunFam MDIS1-interacting receptor like kinase 2 660 853 - -
Dere02g1970 854 FunFam Putative leucine-rich repeat receptor-like protein kinase family protein 252 345 - -
Dere02g1970 854 Pfam Leucine rich repeat N-terminal domain 11 54 IPR013210 -
Dere02g1970 854 Pfam Leucine rich repeat 458 513 IPR001611 GO:0005515
Dere02g1970 854 PRINTS Leucine-rich repeat signature 132 145 - -
Dere02g1970 854 PRINTS Leucine-rich repeat signature 476 489 - -
Dere02g1970 854 ProSiteProfiles Leucine-rich repeat profile. 478 500 IPR001611 GO:0005515
Dere02g1970 854 FunFam Nuclear pore complex protein NUP107 9 151 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere02g1970 Dere-ChrDere02 19770463 19775079 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere02g1970 9 753 Receptor kinase-like Gene Family AT4G08850 36.524 2.32e-169 516
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Dere02g1970 Pkinase 2.4e-30 CL0016